Alignment Contig 9636

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF010H15+ ACTAATTGTCAAAAAAGCATCTTTACAAAACCACAGTTCAACTGAGAAACTCAAATTACA
rJMFF020F07+ CTGAGAAACTCAAATTACA
rJMFF022J11+ CTGAGAAACTCAAATTACA
rJMFF011C04+ ATTACA
rJMFF024M07+ CA
____________________________________________________________
consensus ACTAATTGTCAAAAAAGCATCTTTACAAAACCACAGTTCAACTGAGAAACTCAAATTACA

. : . : . : . : . : . :
rJMFF010H15+ TTGATTACCCTTGCATTTTCTCTGATACAAATCAAAATAAGTAGTACTTGTAGGCAAATA
rJMFF020F07+ TTGATTACCCTTGCATTTTCTCTGATACAAATCAAAATAAGTAGTACTTGTAGGCAAATA
JMFN018E24- ATCAAAATAAGTAGTACTGTAGGGCAAATA
rJMFF022J11+ TTGATTACCCTTGCATTTTCTCTGATACAAATCAAAATAAGTAGTACTTGTAGGCAAATA
rJMFF011C04+ TTGATTACCCTTGCATTTTCTCTGATACAAATCAAAATAAGTAGTACTTGTAGGCAAATA
rJMFF024M07+ TTGATTACCCTTGCATTTTCTCTGATACAAATCAAAATAAGTAGTACTTGTAGGCAAATA
____________________________________________________________
consensus TTGATTACCCTTGCATTTTCTCTGATACAAATCAAAATAAGTAGTACTTGTAGGCAAATA

. : . : . : . : . : . :
rJMFF010H15+ TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG
rJMFF020F07+ TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG
JMFN018E24- TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG
rJMFF022J11+ TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG
rJMFF011C04+ TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG
rJMFF024M07+ TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG
____________________________________________________________
consensus TAAGGTAGACACTAGAAGATCTTATGACAGCCCCAGCAGGCGGCAGCTTTGGTGGTGGTG

. : . : . : . : . : . :
rJMFF010H15+ GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA
rJMFF020F07+ GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA
JMFN018E24- GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA
rJMFF022J11+ GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA
rJMFF011C04+ GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA
rJMFF024M07+ GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA
____________________________________________________________
consensus GTGGTGGGGCAAAGTGATTCAGCTCACTGCTCATGTGGTGGCCTGGAGTTGAATGACTGA

. : . : . : . : . : . :
rJMFF010H15+ GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT
rJMFF020F07+ GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT
JMFN018E24- GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT
rJMFF022J11+ GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT
rJMFF011C04+ GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT
rJMFF024M07+ GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT
____________________________________________________________
consensus GCATTTGAACTAAGATTTGAGCCCTGTCGTGTAAACAAGTTTGGGTATGAGAAGTATGTT

. : . : . : . : . : . :
rJMFF010H15+ TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT
rJMFF020F07+ TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT
JMFN018E24- TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT
rJMFF022J11+ TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT
rJMFF011C04+ TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT
rJMFF024M07+ TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT
____________________________________________________________
consensus TCATCGTCGATAGAAGGCAATCTCTGAGGTTGATGATGCCTCGATTGATCGTTGAGCTTT

. : . : . : . : . : . :
rJMFF010H15+ GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA
rJMFF020F07+ GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA
JMFN018E24- GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA
rJMFF022J11+ GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA
rJMFF011C04+ GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA
rJMFF024M07+ GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA
____________________________________________________________
consensus GGGCTTTCAGAGATTGAAGCAGCATCGGAGCTGGAAAATGAGCTTTCGTGCTCCAAATGA

. : . : . : . : . : . :
rJMFF010H15+ GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA
rJMFF020F07+ GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA
JMFN018E24- GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA
rJMFF022J11+ GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA
rJMFF011C04+ GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA
rJMFF024M07+ GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA
____________________________________________________________
consensus GGCTTTTCAGAGCTGTCATCCTTCTGTGCATCAACATGGAATGGGTCCTTGCCGGCATCA

. : . : . : . : . : . :
rJMFF010H15+ TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA
rJMFF020F07+ TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA
JMFN018E24- TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA
rJMFF022J11+ TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA
rJMFF011C04+ TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA
rJMFF024M07+ TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA
____________________________________________________________
consensus TCCTTTTTCTTTGTTAGTTCACTGATTCTGAGCTGTGCAAGGCTCGCCGCTGAGCGAGCA

. : . : . : . : . : . :
rJMFF010H15+ GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT
rJMFF020F07+ GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT
JMFN018E24- GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT
rJMFF022J11+ GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT
rJMFF011C04+ GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT
rJMFF024M07+ GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT
____________________________________________________________
consensus GCAGCAGCTGCACGTTCAGCTGATTCAGCCGCGGCCTGAGCAGCGGCTAATACATCTTGT

. : . : . : . : . : . :
rJMFF010H15+ AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGCAGATCACTTTGTTTC
rJMFF020F07+ AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGCAGATCACTTTGTTTC
JMFN018E24- AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGCAGATCACTTTGTTTC
rJMFF022J11+ AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGAAGATCACTTTGTTTC
rJMFF011C04+ AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGCAGATCACTTTGTTTC
rJMFF024M07+ AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGCAGATCACTTTGTTTC
____________________________________________________________
consensus AAATCTACATTCGTTTCACTTGGGGCTTTTGGAAGGGGTGGAGGCAGATCACTTTGTTTC

. : . : . : . : . : . :
rJMFF010H15+ ACAG
rJMFF020F07+ ACAGAAGAAGATGATTTTGGTGGGGGAGCC-ATGAATGGCAAGAACTGCTTCTCTTCATT
JMFN018E24- ACAGAAGAAGATGATTTTGGTGGGGGAGCCCATGAATGGCAAGAACTGCTTCTCTTCA
rJMFF022J11+ ACAGAAGAAGATGATTTTGGTGGGGGAGCC-ATGAATGGCAAGAACTGCTTCTCTTCATT
rJMFF011C04+ ACAGAAGAAGATGATTTTGGTGGGGGAGCC-ATGAATGGCAAGAACTGCTTCTCTTCATT
rJMFF024M07+ ACAGAAGAAGATGATTTTGGTGGGGGAGCC-ATGAATGGCAAGAACTGCTTCTCTTCATT
____________________________________________________________
consensus ACAGAAGAAGATGATTTTGGTGGGGGAGCC-ATGAATGGCAAGAACTGCTTCTCTTCATT

. : . : . : . : . : . :
rJMFF020F07+ TGGAGCAGGT
rJMFF022J11+ TGGAGCAGGTGACAAATCAGTCAATTTATGCTCCCTTTCCAACAAAACTTCCTCATGCTC
rJMFF011C04+ TGGAGCAGGTGACAAATCAGTCAATTTATGCTCCCTTTCCAACAAAACTTCCTCATGCTC
rJMFF024M07+ TGGAGCAGGTGACAAATCAGTCAATTTATGCTCC
____________________________________________________________
consensus TGGAGCAGGTGACAAATCAGTCAATTTATGCTCCCTTTCCAACAAAACTTCCTCATGCTC

. : . : . : . : . : . :
rJMFF022J11+ CATCTCCGG
rJMFF011C04+ CATCTCCGGGTTTATTTGATGCTAAACCATTAACTTAT
____________________________________________________________
consensus CATCTCCGGGTTTATTTGATGCTAAACCATTAACTTAT