Alignment Contig 9612

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF005N08+ ACTTGATTAAATGTAAAAGTTGAGCTCAACCTAGAGGGCCTCTTTGCCTTGCTGGAGCTT
rJMFF025H15+ AATGTAAAAGTTGAGCTCAACCTAGAGGGCCTCTTTGCCTTGCTGGAGCTT
rJMFF020K13+ AATGTAAAAGTTGAGCTCAACCTAGAGGGCCTCTTTGCCTTGCTGGAGCTT
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consensus ACTTGATTAAATGTAAAAGTTGAGCTCAACCTAGAGGGCCTCTTTGCCTTGCTGGAGCTT

. : . : . : . : . : . :
rJMFF005N08+ CTCCTAATGGTCCTCAACCTACATGCAATTACCATTTCTAGGCAACAATGGAAACTGTAA
rJMFF025H15+ CTCCTAATGGTCCTCAACCTACATGCAATTACCATTTCTAGGCAACAATGGAAACTGTAA
rJMFF020K13+ CTCCTAATGGTCCTCAACCTACATGCAATTACCATTTCTAGGCAACAATGGAAACTGTAA
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consensus CTCCTAATGGTCCTCAACCTACATGCAATTACCATTTCTAGGCAACAATGGAAACTGTAA

. : . : . : . : . : . :
rJMFF005N08+ AAATGACCAAATTACTCTGATCCAAAGCTGTTGAACAAAAATGTAGATAAATTTACCCTA
rJMFF025H15+ AAATGACCAAATTACTCTGATCCAAAGCTGTTGAACAAAAATGTAGATAAATTTACCCTA
rJMFF005M08+ ATTTACCCTA
rJMFF020K13+ AAATGACCAAATTACTCTGATCCAAAGCTGTTGAACAAAAATGTAGATAAATTTACCCTA
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consensus AAATGACCAAATTACTCTGATCCAAAGCTGTTGAACAAAAATGTAGATAAATTTACCCTA

. : . : . : . : . : . :
rJMFF005N08+ ATTTACCACATCCAACCTCACGAAAATAGTGAATCGATCTCCTCCATTCCCATGGCTTCC
rJMFF025H15+ ATTTACCACATCCAACCTCACGAAAATAGTGAATCGATCTCCTCCATTCCCATGGCTTCC
rJMFF005M08+ GTTTACCACATCCTGCCTCACGAAAATAGTGAATCGATCTCCTCCATTCCCATGGCTTCC
rJMFF020K13+ ATTTACCACATCCAACCTCACGAAAATAGTGAATCGATCTCCTCCATTCCCATGGCTTCC
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consensus ATTTACCACATCCAACCTCACGAAAATAGTGAATCGATCTCCTCCATTCCCATGGCTTCC

. : . : . : . : . : . :
rJMFF005N08+ TCTTTGACTATAGTGCTCATCCCTCCGGGATGATGACATTGCGTTATCTCTCCCGATATT
rJMFF025H15+ TCTTTGACTATAGTGCTCATCCCTCCGGGATGATGACATTGCGTTATCTCTCCCGATATT
rJMFF005M08+ TCTTTGACTATAGTGCTCATCCCTCCNGGATGATGACATTGCGTTATCTCTCCCGATATT
rJMFF020K13+ TCTTTGACTATAGTGCTCATCCCTCCGGGATGATGACATTGCGTTATCTCTCCCGATATT
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consensus TCTTTGACTATAGTGCTCATCCCTCCGGGATGATGACATTGCGTTATCTCTCCCGATATT

. : . : . : . : . : . :
rJMFF005N08+ GTAACGAAAGCATCTGGAGATCAATGGCTCGTGGCTAATGCAGTAACTAAAAGACCAAGT
rJMFF025H15+ GTAACGAAAGCATCTGGAGATCAATGGCTCGTGGCTAATGCAGTAACTAAAAGACCAAGT
rJMFF005M08+ GTNACNAANGCATCTGGAGATCNATGGCTCGTGGNTAATGCAGAAACTAANAGACCNAGT
rJMFF020K13+ GTAACGAAAGCATCTGGAGATCAATGGCTCGTGGCTAATGCAGTAACTAAAAGACCAAGT
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consensus GTAACGAAAGCATCTGGAGATCAATGGCTCGTGGCTAATGCAGTAACTAAAAGACCAAGT

. : . : . : . : . : . :
rJMFF005N08+ ACAAGAAACGGTTGTGCACTAGCCTGATACTTCACATCATATTTGACGGGGTCTTTTAGG
rJMFF025H15+ ACAAGAAACGGTTGTGCACTAGCCTGATACTTCACATCATATTTGACGGGGTCTTTTAGG
rJMFF005M08+ ACAANAAACGGTTGTGCACTAGCCTGATACTTCACATCNTATTTGACGGGGTCTTTTAGG
rJMFF020K13+ ACAAGAAACGGTTGTGCACTAGCCTGATACTTCACATCATATTTGACGGGGTCTTTTAGG
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consensus ACAAGAAACGGTTGTGCACTAGCCTGATACTTCACATCATATTTGACGGGGTCTTTTAGG

. : . : . : . : . : . :
rJMFF005N08+ AAGTATTTGAACTGGAAAAAGATCTGTGGTGCTGTTAGACCTAGGAGGGCTAATGCGTAA
rJMFF025H15+ AAGTATTTGAACTGGAAAAAGATCTGTGGTGCTGTTAGACCTAGGAGGGCTAATGCGTAA
rJMFF005M08+ AAGTATTTGAACTGGAAAAANATCTGTGGTGCTGNTAGACCTAGGAGGGCTAATGCGTAA
rJMFF020K13+ AAGTATTTGAACTGGAAAAAGATCTGTGGTGCTGTTAGACCTAGGAGGGCTAATGCGTAA
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consensus AAGTATTTGAACTGGAAAAAGATCTGTGGTGCTGTTAGACCTAGGAGGGCTAATGCGTAA

. : . : . : . : . : . :
rJMFF005N08+ TATGGTTTCCCAACACTAAAAAGATAGCCTGCCACTGATAATTGAGTTAAGTCGATAGCA
rJMFF025H15+ TATGGTTTCCCAACACTAAAAAGATAGCCTGCCACTGATAATTGAGTTAAGTCGATAGCA
rJMFF005M08+ TATGGTTTCCCNACACTAAAAAGATAGCCTGCCACTGATAATTGAGTTAAGTCGATAGCA
rJMFF020K13+ TATGGTTTCCCAACACTAAAAAGATAGCCTGCCACTGATAATTGAGTTAAGTCGATAGCA
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consensus TATGGTTTCCCAACACTAAAAAGATAGCCTGCCACTGATAATTGAGTTAAGTCGATAGCA

. : . : . : . : . : . :
rJMFF005N08+ CCAACACAAATCCATTTGGCAGTTTCTGAGCCAAAAGCTACGGGAAGTGACTGAAGTCCC
rJMFF025H15+ CCAACACAAATCCATTTGGCAGTTTCTGAGCCAAAAGCTACGGGAAGTGACTGAAGTCCC
rJMFF005M08+ CCAACACAAATCCATTTGGCAGTTTCTGAGCCAAAAGCTACGGGAAGTGACTGAAGTCCC
rJMFF020K13+ CCAACACAAATCCATTTGGCAGTTTCTGAGCCAAAAGCTACGGGAAGTGACTGAAGTCCC
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consensus CCAACACAAATCCATTTGGCAGTTTCTGAGCCAAAAGCTACGGGAAGTGACTGAAGTCCC

. : . : . : . : . : . :
rJMFF005N08+ ATGGCCCTATCTCCTTCAATGCTCTTGAAGTCATTTACAATAGCAATACCCAACCCAGCA
rJMFF025H15+ ATGGCCCTATCTCCTTCAATGCTCTTGAAGTCATTTACAATAGCAATACCCAACCCAGCA
rJMFF005M08+ ATGGCCCTATCTCCTTCAATGCTCTTGAAGTCNTTTACAATAGCAATAC
rJMFF020K13+ ATGGCCCTATCTCCTTCAATGCTCTTGAAGTCATTTACAATAGCAATACCCAACCCAGCA
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consensus ATGGCCCTATCTCCTTCAATGCTCTTGAAGTCATTTACAATAGCAATACCCAACCCAGCA

. : . : . : . : . : . :
rJMFF005N08+ ATGCTATACAAGAGTGTTAGAACAATAACATCGGGTGTGAGGGTCCCAAACAAAGCTTGA
rJMFF025H15+ ATGCTATACAAGAGTGTTAGAACAATAACATCGGGTGTGAGGGTCCCAAACAAAGCTTGA
rJMFF020K13+ ATGCTATACAAGAGTGTTAGAACAATAACATCGG
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consensus ATGCTATACAAGAGTGTTAGAACAATAACATCGGGTGTGAGGGTCCCAAACAAAGCTTGA

. : . : . : . : . : . :
rJMFF005N08+ CCAGCCCACCAAGGCAAACTGATGTAGCTCGACCCTAAAGCAAAGTTGCCAATCCATCCA
rJMFF025H15+ CCAGCCCACCAAGGCAAACTGATGTAGCTCGACCCTAAAGCAAAGTTGCCAATCCATCCA
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consensus CCAGCCCACCAAGGCAAACTGATGTAGCTCGACCCTAAAGCAAAGTTGCCAATCCATCCA

. : . : . : . : . : . :
rJMFF005N08+ TTTTGTTTGAG
rJMFF025H15+ TTTTGTTTGAGCT
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consensus TTTTGTTTGAGCT