Alignment Contig 953

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF045L04+ GGATAGCTAGCTGCTTTAGCTTCGGAATCGAAGACTTGAGGGAGAGTGGTTGAGCTAACA
JMSF016C23+ GATAGCTAGCTGCTTTAGCTTCGGAATCGAAGACTTGAGGGAGAGTGGTTGAGCTAACA
JMFF046D07+ GCTGCTTTAGCTTCGGAATCGAAGACTTGAGGGAGAGTGGTTGAGCTAACA
JMSF037A15+ GATAGCTAGCTGCTTTAGCTTCGGAATCGAAGACTTGAGGGAGAGTGGTTGAGCTAACA
____________________________________________________________
consensus GGATAGCTAGCTGCTTTAGCTTCGGAATCGAAGACTTGAGGGAGAGTGGTTGAGCTAACA

. : . : . : . : . : . :
JMSF045L04+ ACAAGAGAGAGACATGGAGCTGGAACCAATGGCGTCAGCAATCGGAGTATCGGTGCCGGT
JMSF016C23+ ACAAGAGAGAGACATGGAGCTGGAACCAATGGCGTCAGCAATCGGAGTATCGGTGCCGGT
JMFF046D07+ ACAAGAGAGAGACATGGAGCTGGAACCAATGGCGTCAGCAATCGGAGTATCGGTGCCGGT
JMSF037A15+ ACAAGAGAGAGACATGGAGCTGGAACCAATGGCGTCAGCAATCGGAGTATCGGTGCCGGT
____________________________________________________________
consensus ACAAGAGAGAGACATGGAGCTGGAACCAATGGCGTCAGCAATCGGAGTATCGGTGCCGGT

. : . : . : . : . : . :
JMSF045L04+ ACTGCGCTTCCTTTTGTGCTTCGTAGCCACAATTCCGGTGAGCTGCCTCCACCGTTTTGT
JMSF016C23+ ACTGCGCTTCCTTTTGTGCTTCGTAGCCACAATTCCGGTGAGCTGCCTCCACCGTTTTGT
JMFF046D07+ ACTGCGCTTCCTTTTGTGCTTCGTAGCCACAATTCCGGTGAGCTGCCTCCACCGTTTTGT
JMSF037A15+ ACTGCGCTTCCTTTTGTGCTTCGTAGCCACAATTCCGGTGAGCTGCCTCCACCGTTTTGT
____________________________________________________________
consensus ACTGCGCTTCCTTTTGTGCTTCGTAGCCACAATTCCGGTGAGCTGCCTCCACCGTTTTGT

. : . : . : . : . : . :
JMSF045L04+ CCCCGGTGGTTCGTCCGGGAGGCACCTCTACGCCGCCCTCACCGGCGCCCTTCTCTCCTA
JMSF016C23+ CCCCGGTGGTTCGTCCGGGANGCACCTCTACGCCGCCC
JMFF046D07+ CCCCGGTGGTTCGTCCGGGAGGCACCTCTACGCCGCCCTCACCGGCGCCCTTCTCTCCTA
JMSF037A15+ CCCCGGTGGTTCGTCCGGGAGGCACCTCTACGCCGCCCTCACCGGCGCCCTTCTCTCCTA
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consensus CCCCGGTGGTTCGTCCGGGAGGCACCTCTACGCCGCCCTCACCGGCGCCCTTCTCTCCTA

. : . : . : . : . : . :
JMSF045L04+ CTTGTCCTTTGGTTTCTCCTCCAACCTCCACTTCTTGGTGCCCATGCTATTGGGCTACGC
JMFF046D07+ CTTGTCCTTTGGTTTCTCCTCCAACCTCCACTTCTTGGTGCCCATGCTATTGGGCTACGC
JMSF037A15+ CTTGTCCTTTGGTTTCTCCTCCAACCTCCACTTCTTGGTGCCCATGCTATTGGGCTACGC
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consensus CTTGTCCTTTGGTTTCTCCTCCAACCTCCACTTCTTGGTGCCCATGCTATTGGGCTACGC

. : . : . : . : . : . :
JMSF045L04+ TTCAATGCTTCTTTACCGCCCTTACTGTGGGATAATCACTTTCTTCCTCGCCTTTGGCTA
JMFF046D07+ TTCAATGCTTCTTTACCGCCCTTACTGTGGGATAATCACTTTCTTCCTCGCCTTTGGCTA
JMSF037A15+ TTCAATGCTTCTTTACCGCCCTTACTGTGGGATAATCACTTTCTTCCTCGCCTTTGGCTA
____________________________________________________________
consensus TTCAATGCTTCTTTACCGCCCTTACTGTGGGATAATCACTTTCTTCCTCGCCTTTGGCTA

. : . : . : . : . : . :
JMSF045L04+ CCTCATTGGATGCCATGTATACTACATGAGTGGCGATGCATGGAAGGAAGGAGGAATTGA
JMFF046D07+ CCTCATTGGATGCCATGTATACTACATGAGTGGCGATGCATGGAAGGAAGGAGCAATTGA
JMSF037A15+ CCTCATTGGATGCCATGTATACTACATGAGTGGCGATGCATGGAAGGAAGGAGGAATTGA
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consensus CCTCATTGGATGCCATGTATACTACATGAGTGGCGATGCATGGAAGGAAGGAGGAATTGA

. : . : . : . : . : . :
JMSF045L04+ TTCTACAGGAGCTTTAATGGTGATCACACTGAAAATCATTTCATGTGTGATGAATTACCA
JMFF046D07+ TTCTACAGGAGCTTTAATGGTGATCACACTGAAAATCATTTCATGTGTGATGAATTAC-A
JMSF037A15+ TTCTACAGGAGCTTTAATGGTGATCACACTGAAAATCATTTCATGTGTGATGAATTACCA
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consensus TTCTACAGGAGCTTTAATGGTGATCACACTGAAAATCATTTCATGTGTGATGAATTACCA

. : . : . : . : . : . :
JMSF045L04+ AGATGGATTGCTGAAGGAGAATGATTTACGTGAGGCACAGAAACAAAACCGTTTGCTCAA
JMFF046D07+ AGATGGATTGCTGAAGGAGAATGATTTACGTGAGGCACAGAAACAAAACCGTTTGCTC
JMSF037A15+ AGATGGATTGCTGAAGGAGAATGATTTACGTGAGGCACAGAAACAAAACCGTTTGCTCAA
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consensus AGATGGATTGCTGAAGGAGAATGATTTACGTGAGGCACAGAAACAAAACCGTTTGCTCAA

. : . : . : . : . : . :
JMSF045L04+ ATTGCCATCATTATTTGAGTACATTGGTTACTGTCTTTGTTGTGGAAGTCATTTTGCTGG
JMSF037A15+ ATTGCCATCATTATTTGAGTACATTGGTTACTGTCTTTGTTGTGGAAGTCATTTTGCTGG
____________________________________________________________
consensus ATTGCCATCATTATTTGAGTACATTGGTTACTGTCTTTGTTGTGGAAGTCATTTTGCTGG

. : . : . : . : . : . :
JMSF045L04+ TCCAGTGTACGAAATGAAGGCTTACCTTGAATGGACAGAGAGGAAAGGAATCTGGAAGCC
JMSF037A15+ TCCAGTGTACGAAATGAAGGCTTACCTTGAATGGACAGAGAGGAAAGGAATCTGGAAGCC
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consensus TCCAGTGTACGAAATGAAGGCTTACCTTGAATGGACAGAGAGGAAAGGAATCTGGAAGCC

. : . : . : . : . : . :
JMSF045L04+ TGCAGGGAAAGAACGTCCGTCACCATCACCTTTTGTGCCAACCTTAAGGGCTCTTCTTCA
JMSF037A15+ TGCAG
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consensus TGCAGGGAAAGAACGTCCGTCACCATCACCTTTTGTGCCAACCTTAAGGGCTCTTCTTCA

. : . : . : . : . : . :
JMSF045L04+ GGCTGCATTTTGTATGGGATTGTATCTGTACCTCGTACCATATTTCCCTCTTGCAAGGTT
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consensus GGCTGCATTTTGTATGGGATTGTATCTGTACCTCGTACCATATTTCCCTCTTGCAAGGTT

. : . : . : . : . : . :
JMSF045L04+ TAATGATTCATTATAC
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consensus TAATGATTCATTATAC