Alignment Contig 9224

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF009L09+ GACCTGAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMSF023A14+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF004I13+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF005N21+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF028M23+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFS166G11+ TTTATTCCGGTCCGGTCCGGTCATTATAT
JMSF051O16+ GAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFS162E05+ TTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFS032E07+ TTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF026B20+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF010C22+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF009K22+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF012F04+ GAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF018N14+ AGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFS144H11+ TTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
JMFF044A02+ AAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT
____________________________________________________________
consensus GACCTGAAGAAGCTCCTTCTTTAGGTCTCTATTTATTCCGGTCCGGTCCGGTCATTATAT

. : . : . : . : . : . :
JMSF009L09+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMSF023A14+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF004I13+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF005N21+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF028M23+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMSF029L24+ GAGAGAGAAAGANAAAGGTTGATATATTATTTAGAT
JMFS166G11+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMSF051O16+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFS162E05+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFS032E07+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF026B20+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF010C22+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF009K22+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF012F04+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF018N14+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFS144H11+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
JMFF044A02+ TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT
____________________________________________________________
consensus TAAGCGAAGAAAGAAAAAATTATAGAGAGAGAAAGAGAAAGGTTGATATATTATTTAGAT

. : . : . : . : . : . :
JMSF009L09+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMSF023A14+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF004I13+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF005N21+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF028M23+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMSF029L24+ GTTTTAGAAATGGCGAGTATTAGTCGGAANGATATGGATCGGGTGAAGGGGCCNTGGANT
JMFS166G11+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMSF051O16+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFS162E05+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFS032E07+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF026B20+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF010C22+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF009K22+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF012F04+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF018N14+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFS144H11+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
JMFF044A02+ GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT
____________________________________________________________
consensus GTTTTAGAAATGGCGAGTATTAGTCGGAAGGATATGGATCGGGTGAAGGGGCCATGGAGT

. : . : . : . : . : . :
JMSF009L09+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMSF023A14+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF004I13+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF005N21+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF028M23+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMSF029L24+ CCTGANGAAGATGAGCTTTTACAGCATCTGGTGCAGAAGCATGGGCCGCGNAACTGGTCG
JMFS166G11+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMSF051O16+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFS162E05+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFS032E07+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF026B20+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF010C22+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF009K22+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF012F04+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF018N14+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFS144H11+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
JMFF044A02+ CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG
____________________________________________________________
consensus CCTGAGGAAGATGAGCTTTTACAGCAGCTGGTGCAGAAGCATGGGCCGCGGAACTGGTCG

. : . : . : . : . : . :
JMSF009L09+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMSF023A14+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF004I13+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF005N21+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF028M23+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMSF029L24+ CTGATCA
JMFS166G11+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMSF051O16+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFS162E05+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFS032E07+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF026B20+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF010C22+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF009K22+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF012F04+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF018N14+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFS144H11+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
JMFF044A02+ CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT
____________________________________________________________
consensus CTGATCAGCAAATCGATTCCGGGGAGATCGGGGAAGTCGTGCCGGTTGCGGTGGTGCAAT

. : . : . : . : . : . :
JMSF009L09+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMSF023A14+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF004I13+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF005N21+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF028M23+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFS166G11+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMSF051O16+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFS162E05+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFS032E07+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF026B20+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF010C22+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF009K22+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF012F04+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF018N14+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFS144H11+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
JMFF044A02+ CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC
____________________________________________________________
consensus CAGCTGTCGCCGCAGGTGGAGCACCGGGCGTTTACGCCGGAGGAGGATGATACTATAATC

. : . : . : . : . : . :
JMSF009L09+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMSF023A14+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF004I13+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF005N21+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF028M23+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFS166G11+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMSF051O16+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFS162E05+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFS032E07+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF026B20+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF010C22+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF009K22+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF012F04+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF018N14+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFS144H11+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
JMFF044A02+ CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG
____________________________________________________________
consensus CGGGCGCATGCCAGGTTTGGGAACAAGTGGGCGACCATAGCTAGGTTGTTGGCTGGGCGG

. : . : . : . : . : . :
JMSF009L09+ ACCGAC
JMSF023A14+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF004I13+ ACC
JMFF005N21+ ACCGAC
JMFF028M23+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFS166G11+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAG
JMSF051O16+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAG
JMFS162E05+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFS032E07+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF026B20+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF010C22+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF009K22+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF012F04+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF018N14+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFS144H11+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG
JMFF044A02+ ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGATGAAGTGCTCGTCCATG
____________________________________________________________
consensus ACCGACAACGCCATTAAGAACCACTGGAACTCTACCTTGAAGAGGAAGTGCTCGTCCATG

. : . : . : . : . : . :
JMSF023A14+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAAAGATCG
JMFF028M23+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTC
JMFS162E05+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACC
JMFS032E07+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAG
JMFF026B20+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCG
JMFF010C22+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAA
JMFF009K22+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAAAGATCG
JMFF012F04+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCANCCGCTCA
JMFF018N14+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAAAGATCG
JMFS144H11+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAAAGATCG
JMFF044A02+ AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAAAGATCG
____________________________________________________________
consensus AGCGCCGATGAAGGGAATGATCTCGCCGATAGGCTTCAACACCAGCCGCTCAAAAGATCG

. : . : . : . : . : . :
JMSF023A14+ GTGAGTGCC-GGCGCCGCGGTTACGCTGCATCTCAATCCGGGGAGTCCTTCCGGGTCGGA
JMFF009K22+ GTGAGTGCCCGGCGCCGCGGTTACGCTGCATCTCAATCCGGGGAGTCCTTCCGGG
JMFF018N14+ GTGAGTGCCCGGCGCCGCGGTTACGCTGCATCTCAA
JMFS144H11+ GTGAGTGCC-GGCGCCGCGGTTACGCTGCATCTCAATCCGGGGAGTCCTTCCGGGTCGGA
JMFF044A02+ GTGAGTGCC-GGCGCCGCGGTTACGCTGCATCTCAATCCGGGGAGTCCTTCCGGGTCGGA
____________________________________________________________
consensus GTGAGTGCC-GGCGCCGCGGTTACGCTGCATCTCAATCCGGGGAGTCCTTCCGGGTCGGA

. : . : . : . : . : . :
JMSF023A14+ TGTTAGCGAATCGAGTTTGCCGGTTATGTCCCCGTCTCATGTG
JMFS144H11+ TGTTAGCGAATCGAGTTTGCCGGTTATGTCCCCGTCTCATGTG
JMFF044A02+ TGTTAGCGAATCGAGTTTGCCGGTTATGTCCCCGTCTCATG
____________________________________________________________
consensus TGTTAGCGAATCGAGTTTGCCGGTTATGTCCCCGTCTCATGTG