Alignment Contig 9050

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFS068B04+ CCACCCTTGTTTTTCTCTCTCTAGAAATTTCATTTCTTTTATTTTCATCCAATCAAACGA
JMFF005D11+ AATCAAACGA
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consensus CCACCCTTGTTTTTCTCTCTCTAGAAATTTCATTTCTTTTATTTTCATCCAATCAAACGA

. : . : . : . : . : . :
JMFS068B04+ CAGATATCTCTCTCCCAGTCTTTATCTCTCTAGGGTTTCACTGTCAACATTCCGATCCAT
JMFF005D11+ CAGATATCTCTCTCCCAGTCTTTATCTCTCTAGGGTTTCACTGTCAACATTCCGATCCAT
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consensus CAGATATCTCTCTCCCAGTCTTTATCTCTCTAGGGTTTCACTGTCAACATTCCGATCCAT

. : . : . : . : . : . :
JMFS068B04+ TCCAGCTCACACCTGAACCAAATCCCCCCACTCTCCTATACATACACTCCTATATCTATA
JMFF005D11+ TCCAGCTCACACCTGAACCAAATCCCCCCACTCTCCTATACATACACTCCTATATCTATA
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consensus TCCAGCTCACACCTGAACCAAATCCCCCCACTCTCCTATACATACACTCCTATATCTATA

. : . : . : . : . : . :
JMFS068B04+ TGCTTCCCTTCTGTACAATGCTTAGCTCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMFF005D11+ TGCTTCCCTTCTGTACAATGCTTAGCTCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMSF012L09+ AGCTCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMFF016A15+ AGCTCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMFF039F14+ TCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMFF012L10+ TCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMFF037D15+ AGCTCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG
JMFS020D03+ TTGTCTTCATTGGTTG
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consensus TGCTTCCCTTCTGTACAATGCTTAGCTCCTCTTGATTCCTTTCCTTGTCTTCATTGGTTG

. : . : . : . : . : . :
JMFS068B04+ AAGTGAAGATTTGGAAAATGTTGGAACATAGAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMFF005D11+ AAGTGAAGATTTGGAAAATGTTGGAACATAGAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMSF012L09+ AAGTGAAGATTTGGAAAATGTTGGAACATAGAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMFF016A15+ AAGTGAAGATTTGGAAAATGTTGGAACA--GAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMFF039F14+ AAGTGAAGATTTGGAAAATGTTGGAACA--GAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMFF012L10+ AAGTGAAGATTTGGAAAATGTTGGAACATAGAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMFF037D15+ AAGTGAAGATTTGGAAAATGTTGGAACA--GAGTGAAGAAATGAGCGAGGCGGAGGTTAC
JMFS020D03+ AAGTGAAGATTTGGAAAATGTTGGAACATAGAGTGAAGAAATGAGCGAGGCGGAGGTTAC
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consensus AAGTGAAGATTTGGAAAATGTTGGAACATAGAGTGAAGAAATGAGCGAGGCGGAGGTTAC

. : . : . : . : . : . :
JMFS068B04+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMFF005D11+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMSF012L09+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMFF016A15+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMFF039F14+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMFF012L10+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMFF037D15+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
JMFS020D03+ GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA
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consensus GATGACAAAGCAAAAGCCAACGCCTGTTGCTGTGCCGCTGGGGACTCTGATTGGCCGCGA

. : . : . : . : . : . :
JMFS068B04+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMFF005D11+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMSF012L09+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMFF016A15+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMFF039F14+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMFF012L10+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMFF037D15+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
JMFS020D03+ GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC
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consensus GCTGCGGAATGAGAGTAAGGTGGAGAAACCTACTGTGAAGTATGGACAAGCCGCTCTGGC

. : . : . : . : . : . :
JMFS068B04+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMFF005D11+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMSF012L09+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMFF016A15+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMFF039F14+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMFF012L10+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMFF037D15+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
JMFS020D03+ TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC
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consensus TAAGAAAGGGGAGGACTATTTTCTGATTAAGCCTGATTGTCAGAGGATTTCAGGCAGTTC

. : . : . : . : . : . :
JMFS068B04+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
JMFF005D11+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGG
JMSF012L09+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
JMFF016A15+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
JMFF039F14+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
JMFF012L10+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
JMFF037D15+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
JMFS020D03+ GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT
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consensus GACGACCTCATTTTCAGTTTTTGCGATCTTTGATGGGCATAATGGTATATCAGCTGCTAT

. : . : . : . : . : . :
JMFS068B04+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
JMSF012L09+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
JMFF016A15+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
JMFF039F14+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
JMFF012L10+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
JMFF037D15+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
JMFS020D03+ ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG
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consensus ATTTGCAAAAGAGAATCTGCTGAACAATGTTTTGAGTGCAATTCCCCAAGGACTTGGTAG

. : . : . : . : . : . :
JMFS068B04+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGG
JMSF012L09+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT
JMFF016A15+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT
JMFF039F14+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT
JMFF012L10+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT
JMFF037D15+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT
JMFS020D03+ GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT
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consensus GGAAGAGTGGCTTCAAGCTCTTCCTAGAGCATTAGTTGCTGGGTTTGTGAAAACAGATAT

. : . : . : . : . : . :
JMSF012L09+ AGAGTTTCAGCAGAAAGGTGAAACATCAGGTACAACTGTAACATTTGTTGTAATTGATGA
JMFF016A15+ AGAGTTTCAGCAGAAAGGTGAAACATCAGGTACAACTGTAACATTTGTTGTAATTGATGA
JMFF039F14+ AGAGTTTC
JMFF012L10+ AGAGTTTCAGCAGAAAGGTGAAACATCAGGTACAACTGTAACATTTGTTGTAATTGATGA
JMFF037D15+ AGAGTTTCAGCAGAAAGGTGAAACATCAGGTACAACTGTAACATTTGTTGTAATTGATGA
JMFS020D03+ AGAGTTTCAGCAGAAAGGTGAAACATCAGGTACAACTGTAACATTTGTTGTAATTGATGA
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consensus AGAGTTTCAGCAGAAAGGTGAAACATCAGGTACAACTGTAACATTTGTTGTAATTGATGA

. : . : . : . : . : . :
JMSF012L09+ ATGGACTGTGACTGTTGCATCT
JMFF016A15+ ATGGACTGTGACTGTTGCATCTGTTGGGGATTCTCGATGCATACTGGAC
JMFF012L10+ ATGGACTGTGACTGTTGCATCTGTTGGGGATTCTCGATGCATACTGGAC
JMFF037D15+ ATGGACTGTGACTGTTGCATCTGTTGGGGATTCTCGATGCATACTGGAC
JMFS020D03+ ATGGACTGTGACTGTTGCATCTGTTGGGGATTCTCGATGCATACTGGACACACAAGGAGG
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consensus ATGGACTGTGACTGTTGCATCTGTTGGGGATTCTCGATGCATACTGGACACACAAGGAGG

. : . : . : . : . : . :
JMFS020D03+ GGTTGTTTCCCTGTTGACAGTCGACCATAGGTTGGAAGAGAATGAGGAAGAACGAGAGCG
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consensus GGTTGTTTCCCTGTTGACAGTCGACCATAGGTTGGAAGAGAATGAGGAAGAACGAGAGCG

. : . : . : . : . : . :
JMFS020D03+ TGTCACTGC
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consensus TGTCACTGC