Alignment Contig 8972

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN042P20- AATTTTTGTATATATATATATTTATACGCGCTGAAAATACCTGTAATCAGGGCTGGGCAT
JMFF017D23+ GTAATCAGGGCTGGGCAT
JMFF028D13+ GTAATCAGGGCTGGGCAT
JMFF013N03+ AATCAGGGCTGGGCAT
JMFF047M11+ AATCAGGGCTGGGCAT
JMFF002F10+ GTAATCAGGGCTGGGCAT
JMFF024G08+ GTAATCAGGGCTGGGCAT
JMFF033K12+ AATCAGGGCTGGGCAT
JMFF047K23+ AATCAGGGCTGGGCAT
JMFF002E18+ AGGGCTGGGCAT
JMFF003F16+ AATCAGGGCTGGGCAT
____________________________________________________________
consensus AATTTTTGTATATATATATATTTATACGCGCTGAAAATACCTGTAATCAGGGCTGGGCAT

. : . : . : . : . : . :
JMFN042P20- CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF017D23+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF028D13+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF013N03+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF047M11+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF002F10+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF024G08+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF033K12+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF047K23+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF002E18+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFF003F16+ CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
JMFS038B12+ GAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT
____________________________________________________________
consensus CATAGAGAAGAGGTAAAGTTGCGAACTTGAAGTAGAGGATATTATGGGCAAGTTGGCGGT

. : . : . : . : . : . :
JMFN042P20- GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF017D23+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF028D13+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF013N03+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF047M11+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF002F10+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF024G08+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF033K12+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF047K23+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF002E18+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFF003F16+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
JMFS038B12+ GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA
____________________________________________________________
consensus GGGGGCTGGGGTGGTGTGTGCGGCGGCGGTGTGCGTCGCGGCGGCGCTCGTGGTGAGGCA

. : . : . : . : . : . :
JMFN042P20- CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF017D23+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF028D13+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF013N03+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF047M11+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF002F10+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF024G08+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF033K12+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF047K23+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF002E18+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFF003F16+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
JMFS038B12+ CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA
____________________________________________________________
consensus CCACATGAGGAGCTCCGGCCGGTGGGCCAAGACCGTGGCTTTACTGAAAGAGCTGGAGGA

. : . : . : . : . : . :
JMFN042P20- GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF017D23+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF028D13+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF013N03+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF047M11+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF002F10+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF024G08+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF033K12+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF047K23+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF002E18+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFF003F16+ GAAGTGTGGGAGGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
JMFS038B12+ GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT
____________________________________________________________
consensus GAAGTGTGGGACGCCGGCCGGCAAGCTCCGGCAAGTCGCCGACGCCATGGCCGTCGAGAT

. : . : . : . : . : . :
JMFN042P20- GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF017D23+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF028D13+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF013N03+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF047M11+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF002F10+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF024G08+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF033K12+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF047K23+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF002E18+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFF003F16+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
JMFS038B12+ GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA
____________________________________________________________
consensus GCACGCCGGACTTGCATCTGAGGGTGGCAGCAAACTCAAGATGCTTATTAGCTACGTTGA

. : . : . : . : . : . :
JMFN042P20- TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF017D23+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF028D13+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF013N03+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACT-ATGAGGTACAAA
JMFF047M11+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF002F10+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF024G08+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF033K12+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF047K23+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF002E18+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFF003F16+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
JMFS038B12+ TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA
____________________________________________________________
consensus TAACCTCCCCTCTGGGGATGAAGAAGGCCTGTTTTATGCGCTAGACTTAGGAGGTACAAA

. : . : . : . : . : . :
JMFN042P20- CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAG
JMFF017D23+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAGTC
JMFF028D13+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAGTC
JMFF013N03+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTANTTAATAGAGAATC
JMFF047M11+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
JMFF002F10+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
JMFF024G08+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAGTC
JMFF033K12+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
JMFF047K23+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
JMFF002E18+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
JMFF003F16+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
JMFS038B12+ CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC
____________________________________________________________
consensus CTTCCGGGTCATGCGTGTGCAGTTGGGAGGGAAAGAGAAAGGCGTAGTTAATAGAGAATC

. : . : . : . : . : . :
JMFF017D23+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF028D13+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGA
JMFF013N03+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF047M11+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF002F10+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF024G08+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGANGCACTGTTTGATTT
JMFF033K12+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF047K23+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF002E18+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFF003F16+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
JMFS038B12+ TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT
____________________________________________________________
consensus TCAAGAAGTCTCAATTCCACGGCATTTGATGGTTGGATCATCCGAGGCACTGTTTGATTT

. : . : . : . : . : . :
JMFF017D23+ TATTGCCCATGAGCTCGCAATGTTTGTCAAGAA
JMFF013N03+ TATTGCCCATGAGCTCGCAATGTTTGTCAAGAA
JMFF047M11+ TATTGCCCA
JMFF002F10+ TATTGCCCAT
JMFF024G08+ TATTGCCCATGAGCTCG
JMFF033K12+ TATTGCCCATGAGCTCGCAATGTTTGTCAAGAA
JMFF047K23+ TATTGCCCATG
JMFF002E18+ TATTGCCCATGAGCTCGCAATGTTTGTCAAGAA
JMFF003F16+ TATTGCCCATGAGCTCGCAATGTTTGTCAAGAA
JMFS038B12+ TATTGCCCATGAGCTCGCAATGTTTGTCAAGAAAGAAGGTGAAGATTTCCACATTCCACC
____________________________________________________________
consensus TATTGCCCATGAGCTCGCAATGTTTGTCAAGAAAGAAGGTGAAGATTTCCACATTCCACC

. : . : . : . : . : . :
JMFS038B12+ TGATAAACAAAGGGAATTGGGCTTCACCTTTTCATTCCCGACTAGACAAACCTCGATAGC
____________________________________________________________
consensus TGATAAACAAAGGGAATTGGGCTTCACCTTTTCATTCCCGACTAGACAAACCTCGATAGC

. : . : . : . : . : . :
JMFS038B12+ ATC
____________________________________________________________
consensus ATC