Alignment Contig 8936

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN015C01- GCTCCCAGTAATCACTGCTTCCATCATTCAAGCAATAAAAGACAAAACATAACCAAAGTA
rJMFF002O22+ ATCACTGCTTCCATCATTCAAGCAATAAAAGACAAAACATAACCAAAGTA
rJMFF013K15+ AGCAATAAAAGACAAAACATAACCAAAGTA
rJMSF039D04+ AAACATAACCAAAGTA
rJMFF021D10+ ACATAACCAAAGTA
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consensus GCTCCCAGTAATCACTGCTTCCATCATTCAAGCAATAAAAGACAAAACATAACCAAAGTA

. : . : . : . : . : . :
JMFN015C01- ACAATCCTTAGGTTAATAAGGTAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA
rJMFF002O22+ ACAATCCTTAGGTTAATAAGGTAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA
rJMFF013K15+ ACAATCCTTAGGTTAATAAGGTAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA
rJMSF039D04+ ACAATCCTTAGGTTAATAAGGTAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA
rJMFF009A13+ TAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA
rJMFF021D10+ ACAATCCTTAGGTTAATAAGGTAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA
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consensus ACAATCCTTAGGTTAATAAGGTAACCTTTCAGTTACAAACCTCAAATGCAAAATCTTCTA

. : . : . : . : . : . :
JMFN015C01- AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT
rJMFF002O22+ AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT
rJMFF013K15+ AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT
rJMSF039D04+ AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT
rJMFF009A13+ AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT
rJMFF021D10+ AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT
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consensus AATTGATCCCCACTTATAAGATACAGAGATGGATTACATTGCTTCATAAATTTAGACAAT

. : . : . : . : . : . :
JMFN015C01- AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT
rJMFF002O22+ AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT
rJMFF013K15+ AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT
rJMSF039D04+ AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT
rJMFF009A13+ AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT
rJMFF021D10+ AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT
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consensus AAGAGTTGCTAAACTAAGGGAACTGCAGAAAAGAAGAAAAGTCGAAAGCAGGAAGAGACT

. : . : . : . : . : . :
JMFN015C01- GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG
rJMFF002O22+ GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG
rJMFF013K15+ GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG
rJMSF039D04+ GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG
rJMFF009A13+ GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG
rJMFF021D10+ GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG
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consensus GGTTTTTGAGCTTGTAGTGACAAAACTTTGTTACAGGAGATCAGCAACATTTGCTGGCAG

. : . : . : . : . : . :
JMFN015C01- CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT
rJMFF002O22+ CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT
rJMFF013K15+ CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT
rJMSF039D04+ CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT
rJMFF009A13+ CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT
rJMFF021D10+ CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT
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consensus CTCCTCGATCATCACGTTGTAGAACTTCTGGATGTCAAAAAGCATCCTCTCATCGTCCTT

. : . : . : . : . : . :
JMFN015C01- TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG
rJMFF002O22+ TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG
rJMFF013K15+ TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG
rJMSF039D04+ TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG
rJMFF009A13+ TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG
rJMFF021D10+ TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG
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consensus TGTTACAAAGTTGATTGCCACACCTTTCCTCCCGAACCTTCCACTACGACCAATACGATG

. : . : . : . : . : . :
JMFN015C01- CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC
rJMFF002O22+ CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC
rJMFF013K15+ CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC
rJMSF039D04+ CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC
rJMFF009A13+ CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC
rJMFF021D10+ CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC
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consensus CAGGTAGTTCTCGGGTTGAGTAGGGAGATCATAGTTAATGACGAGGGATACTTGTTGAAC

. : . : . : . : . : . :
JMFN015C01- ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA
rJMFF002O22+ ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA
rJMFF013K15+ ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA
rJMSF039D04+ ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA
rJMFF009A13+ ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA
rJMFF021D10+ ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA
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consensus ATCAATTCCTCTTGCCAACAGATCAGTAGTGATGAGAACACGGGAGGACCCAGAACGGAA

. : . : . : . : . : . :
JMFN015C01- TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT
rJMFF002O22+ TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT
rJMFF013K15+ TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT
rJMSF039D04+ TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT
rJMFF009A13+ TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT
rJMFF021D10+ TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT
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consensus TTCACGCATAATAATGTCCCTTGTGTTCTGGTCCATGTCACCATGGGTGGCTGACACTGT

. : . : . : . : . : . :
JMFN015C01- ATGGTCTCG
rJMFF002O22+ ATGGTCTCGGCTTCTCATCTTGTCAGTTAACCAGTCAACCTTACGACGGGTATTCACAAA
rJMFF013K15+ ATGGTCTCGGCTTCTCATCTTGTCAGTTAACCAGTCAACCTTACGACGGGTATTCACAAA
rJMSF039D04+ ATGGTCTCGGCTTCTCATCTTGTCAGTTAACCAGTCAACCTTACGACGGGTATTCACAAA
rJMFF009A13+ ATGGTCTCGGCTTCTCATCTTGTCAGTTAACCAGTCAACCTTACGACGGGTATTCACAAA
rJMFF021D10+ ATGGTCTCGGCTTCTCATCTTGTCAGTTAACCAGTCAACCTTACGACGGGTATTCACAAA
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consensus ATGGTCTCGGCTTCTCATCTTGTCAGTTAACCAGTCAACCTTACGACGGGTATTCACAAA

. : . : . : . : . : . :
rJMFF002O22+ AATCACACTCTGTGTAATGGCAAGGGTTTCGTACNAATCACAAAGTGTCTCAAGCTTCCA
rJMFF013K15+ AATCACACTCTGTGTAATGGCAAGGGTTTCGTACAAATCACAAAGTGTCTCAAGCTTCCA
rJMSF039D04+ AATCACACTCTGTGTAATGGCAAGGGTTTCGTACAAATCACAAAGTGTCTCAAGCTTCCA
rJMFF009A13+ AATCACACTCTGTGTAATGGCAAGGGTTTCGTACAAATCACAAAGTGTCTCAAGCTTCCA
rJMFF021D10+ AATCACACTCTGTGTAATGGCAAGGGTTTCGTACAAATCACAAAGTGTCTCAAGCTTCCA
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consensus AATCACACTCTGTGTAATGGCAAGGGTTTCGTACAAATCACAAAGTGTCTCAAGCTTCCA

. : . : . : . : . : . :
rJMFF002O22+ CTCTTCTTCGTCGACATTGACATGGAATTGCTTA
rJMFF013K15+ CTCTTCTTTGTCGACATTGACATGGAATTGCTTAATACCC-TCTAGTGTCAGCTCATCAC
rJMSF039D04+ CTCTTCTTTGTCGACATTGACATGGAATTGCTTAATACCC-TCTAGTGTCAGCTCATCAC
rJMFF009A13+ CTCTTCTTTGTCGACATTGACATGGAATTGCTTAATACCC
rJMFF021D10+ CTCTTCTTTGTCGACATTGACATGGAATTGCTTAATACCCCTCTAGTGTCAGCTCATCAC
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consensus CTCTTCTTTGTCGACATTGACATGGAATTGCTTAATACCC-TCTAGTGTCAGCTCATCAC

. : . : . : . : . : . :
rJMSF039D04+ GCTTCACAAGAATTCTCACAGGTTTGTTCATGAATTTCCTTGTTATCTCAAGTGCCTCAG
rJMFF021D10+ GCTTCAC
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consensus GCTTCACAAGAATTCTCACAGGTTTGTTCATGAATTTCCTTGTTATCTCAAGTGCCTCAG

. : . : . : . : . : . :
rJMSF039D04+ GAGGCATTGTAGCTGAGAAG
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consensus GAGGCATTGTAGCTGAGAAG