Alignment Contig 8630

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF043H08+ TCCAATGCCGGTGTACCAACATTGAGAGGTACAGTAACAGATTTAATGTTATTCCGATCC
rJMFF017O17+ TAATGTTATTCCNATCC
JMFS119B10- TATTCCGATCC
rJMSF015O06+ GTACCAACATTGAGAGGTACAGTAACAGATTTAATGTTATTCCGATCC
rJMFF022B16+ ATGTTATTCCGATCC
rJMFF015F06+ TGTTATTCCGATCC
rJMFF002G11+ TTATTCCGATCC
____________________________________________________________
consensus TCCAATGCCGGTGTACCAACATTGAGAGGTACAGTAACAGATTTAATGTTATTCCGATCC

. : . : . : . : . : . :
rJMSF043H08+ GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC
rJMFF017O17+ GNTCATATCACTGTATGGAAAGAATACNAGATCAAGTACTTTAAAAAAACTGCTTCCATC
JMFS119B10- GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC
rJMSF015O06+ GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC
rJMFF022B16+ GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC
rJMFF015F06+ GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC
rJMFF002G11+ GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC
____________________________________________________________
consensus GATCAGATCACTGTATGGAAAGAATACAAGATCA-GTACTTTAAAAAAACTGCAACCATC

. : . : . : . : . : . :
rJMSF043H08+ CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT
rJMFF017O17+ CATCCTGAANTTTCTTCNGAAATAATCTTTTTNCTGTNCTTTATTCTTCTTTCNAATTTT
JMFS119B10- CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT
rJMSF015O06+ CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT
rJMFF022B16+ CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT
rJMFF015F06+ CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT
rJMFF002G11+ CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT
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consensus CATCCTGAAGTTTCTTCAGAAATAATCTTTTTTCTGTTCTTTATTCTTCTTTCAAATTTT

. : . : . : . : . : . :
rJMSF043H08+ ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
rJMFF017O17+ ACAGCACCGANNTCCAAAAGCTTCACCACCACATGACGGCAANGTTGAGTTGCTCATTGC
JMFS119B10- ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
rJMFF021O13+ AGTTGCTCATTGC
rJMSF015O06+ ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
rJMSF042H16+ TGCTCNTTGC
rJMFF022B16+ ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
rJMFF015F06+ ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
rJMFF002G11+ ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
JMFS131A06- CCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC
rJMFF034I06+ AGTTGCTCATTGC
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consensus ACAGCACCGAAATCCAAAAGCTTCACCACCACATGACGGCAAAGTTGAGTTGCTCATTGC

. : . : . : . : . : . :
rJMSF043H08+ TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMFF017O17+ TTGGACAATTGTCNAANAACATATGGAANAATGCCTCC
JMFS119B10- TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMFF021O13+ TTGGACAATTGTCGAATAACATATGGAANAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMSF015O06+ TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMSF042H16+ TTGGACNATTGTCNAATAACNTATGGAANAATGCCTCCATGATTGAAATAANNCAACTCC
rJMFF022B16+ TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMFF015F06+ TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMFF002G11+ TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
JMFS131A06- TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
rJMFF034I06+ TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC
____________________________________________________________
consensus TTGGACAATTGTCGAATAACATATGGAAGAATGCCTCCATGATTGAAATAAGCCAACTCC

. : . : . : . : . : . :
rJMSF043H08+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
JMFS119B10- ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMFF021O13+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMSF015O06+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMSF042H16+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMFF022B16+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMFF015F06+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMFF002G11+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
JMFS131A06- ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
rJMFF034I06+ ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC
____________________________________________________________
consensus ACCTCGGTATCAAAGCGTACAGTGCAAGTGAAAGTTTTTCCATTGTCAGTCTTAACAGTC

. : . : . : . : . : . :
rJMSF043H08+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
JMFS119B10- ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
rJMFF021O13+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTANCGCTCG
rJMSF015O06+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
rJMSF042H16+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
rJMFF022B16+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
rJMFF015F06+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
rJMFF002G11+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
JMFS131A06- ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
rJMFF034I06+ ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG
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consensus ACATCCTGACCGGGGCGAATTTCATTAATATTGCTGGGAAGATCAATGCTGTAGCGCTCG

. : . : . : . : . : . :
rJMSF043H08+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
JMFS119B10- TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMFF021O13+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMSF015O06+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMSF042H16+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMFF022B16+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMFF015F06+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMFF002G11+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
JMFS131A06- TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
rJMFF034I06+ TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA
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consensus TGGCCAGTCAATCCAAGTGAGTCTGCATCCTCTCCGGCCTTGAAACACAGAGGAACGATA

. : . : . : . : . : . :
rJMSF043H08+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
JMFS119B10- CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMFF021O13+ CCCATTCCAACTAAGTTGCTGCGGNGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMSF015O06+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMSF042H16+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMFF022B16+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMFF015F06+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMFF002G11+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
JMFS131A06- CCCATTCCAACTAAGTTGCTGCGGTGAATCATCTCAAAGCTTTTAGCTATAACTGCTTTT
rJMFF034I06+ CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT
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consensus CCCATTCCAACTAAGTTGCTGCGGTGAATCCTCTCAAAGCTTTTAGCTATAACTGCTTTT

. : . : . : . : . : . :
rJMSF043H08+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT
JMFS119B10- ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT
rJMFF021O13+ ACTCCCAACAACATTGGGCCC
rJMSF015O06+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT
rJMSF042H16+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT
rJMFF022B16+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGCGCTACCACTTCCATATTCT
rJMFF015F06+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGCGCTACCACTTCCATATTCT
rJMFF002G11+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGCGCTACCACTTCCATATTCT
JMFS131A06- ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT
rJMFF034I06+ ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT
JMFS059F11- AGCTACCACTTCCATATTCT
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consensus ACTCCCAACAACATTGGGCCCTTGGCAGCCCAATCCCTAGAGCTACCACTTCCATATTCT

. : . : . : . : . : . :
rJMSF043H08+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
JMFS119B10- GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
rJMSF015O06+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
rJMSF042H16+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
rJMFF022B16+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
rJMFF015F06+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
rJMFF002G11+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
JMFS131A06- GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
rJMFF034I06+ GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
JMFS059F11- GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC
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consensus GCTCCAGCCAAGATTATAGTGTCCTTCCCTTCAGACTTGTATCTCATTGCAGCATCAAAC

. : . : . : . : . : . :
rJMSF043H08+ ACATAGAGTTTCTCTCCCGTGGGAAATGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
JMFS119B10- ACATAGAGTTTC
rJMSF015O06+ ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
rJMSF042H16+ ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
rJMFF022B16+ ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
rJMFF015F06+ ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTT
rJMFF002G11+ ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
JMFS131A06- ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
rJMFF034I06+ ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
JMFS059F11- ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG
____________________________________________________________
consensus ACATAGAGTTTCTCTCCCGTGGGAA-TGTGAACTGTCTTTGGACCAACTTCTCCACTTAG

. : . : . : . : . : . :
rJMSF043H08+ CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTAC
rJMSF015O06+ CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTACCCCTCGCCATGATTTCATCATTACC
rJMSF042H16+ CAGCTTGTTTACAAGGCGGATGTTGGCAATGTACCCCCTCGCCATGATTTCATCATTACC
rJMFF022B16+ CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTACCCCTCGCCATGATTTCATCATTACC
rJMFF002G11+ CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTACCCCTCGCCATGATTTCATCATTACC
JMFS131A06- CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTACCCCTCGCCATGATTTCATCATTACC
JMFS059F11- CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTACCCCTCGCCATGATTTCATCATTACC
____________________________________________________________
consensus CAGCTTGTTTACAAGGCGGATGTTGGCAAATGTACCCCTCGCCATGATTTCATCATTACC

. : . : . : . : . : . :
rJMSF015O06+ ACGGCG
rJMSF042H16+ ACGG
rJMFF022B16+ ACGGCGACTGCCATA
rJMFF002G11+ ACGGCGACTGCCATAAGAG
JMFS131A06- ACGGCGACTGCCATAAGAG
JMFS059F11- ACGGCGACTGCCATAAGAGTTGAAGTCCTTGCGGTCAACACCTCGCTCAAGGAGGTATTT
____________________________________________________________
consensus ACGGCGACTGCCATAAGAGTTGAAGTCCTTGCGGTCAACACCTCGCTCAAGGAGGTATTT

. : . : . : . : . : . :
JMFS059F11- AGCAGCTGGACTATCCTTGTGAATGCTTCCAGCAGGAGAGATATGATCTGTCGTGATACT
____________________________________________________________
consensus AGCAGCTGGACTATCCTTGTGAATGCTTCCAGCAGGAGAGATATGATCTGTCGTGATACT

. : . : . : . : . : . :
JMFS059F11- ATCACCAAAGTTCAATAAGCAATACGCATCTTTCACTCCACGAGCTCCTGGAGGATCCAT
____________________________________________________________
consensus ATCACCAAAGTTCAATAAGCAATACGCATCTTTCACTCCACGAGCTCCTGGAGGATCCAT

. : . : . : . : . : . :
JMFS059F11- AGTCATGCCTTTGAAATATGGTGGCTCATGAATGTATGTGGAATTAGGATCCCACGAGTA
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consensus AGTCATGCCTTTGAAATATGGTGGCTCATGAATGTATGTGGAATTAGGATCCCACGAGTA

. : . : . : . : . : . :
JMFS059F11- CAACTTGGCTTCTGGGACAGATAACTGATTCCACATCGGGTTCCCCTTTGTAATGGATTC
____________________________________________________________
consensus CAACTTGGCTTCTGGGACAGATAACTGATTCCACATCGGGTTCCCCTTTGTAATGGATTC

. : . : . : . : . : . :
JMFS059F11- ATATGTACTCTTGAACATGTCAGGTAACACACTGGATTGGACAGCCTCAGCAACTTCCTC
____________________________________________________________
consensus ATATGTACTCTTGAACATGTCAGGTAACACACTGGATTGGACAGCCTCAGCAACTTCCTC

. : . : . : . : . : . :
JMFS059F11- TGTTGTTGGCCAGATATCCCTGAAATAGACATCCTTACCATCCTTGCCTACCCCAATTGG
____________________________________________________________
consensus TGTTGTTGGCCAGATATCCCTGAAATAGACATCCTTACCATCCTTGCCTACCCCAATTGG

. : . : . : . : . : . :
JMFS059F11- TTCTT
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consensus TTCTT