Alignment Contig 8605

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF038N17+ ACGTAACATTCTTCCAATAACACTCATAATACAAACACTCTATAGTATATGTCTAATCCA
rJMSF017P14+ ACACTCTATAGTATATGTCTAATCCA
rJMSF020H12+ ATAACACTCATAATACAAACACTCTATAGTATATGTCTAATCCA
rJMSF009B20+ ATAACACTCATAATACAAACACTCTATAGTATATGTCTAATCCA
____________________________________________________________
consensus ACGTAACATTCTTCCAATAACACTCATAATACAAACACTCTATAGTATATGTCTAATCCA

. : . : . : . : . : . :
rJMSF038N17+ TTACAAAATGAACATATATGTGAGTTTCTTCCTTATTTTACTTTCACTATTAATCACACT
rJMSF017P14+ TTACAAAATGAACATATATGTGAGTTTCTTCCTTATTTTACTTTAACTATTAATCACACT
rJMSF020H12+ TTACAAAATGAACATATATGTGAGTTTCTTCCTTATTTTACTTTCACTATTAATCACACT
rJMSF009B20+ TTACAAAATGAACATATATGTGAGTTTCTTCCTTATTTTACTTTCACTATTAATCACACT
____________________________________________________________
consensus TTACAAAATGAACATATATGTGAGTTTCTTCCTTATTTTACTTTCACTATTAATCACACT

. : . : . : . : . : . :
rJMSF038N17+ GTAATCCTATAGTTTATGGTATAACAATAATATATTCATACTGATTTCTCTTTGTGAGCT
rJMSF017P14+ GTAATCCTATAGTTTATGGTATAACAATAATATATTCATACTGATTTCTCTTTGTGAGCT
rJMSF020H12+ GTAATCCTATAGTTTATGGTATAACAATAATATATTCATACTGATTTCTCTTTGTGAGCT
rJMSF009B20+ GTAATCCTATAGTTTATGGTATAACAATAATATATTCATACTGATTTCTCTTTGTGAGCT
____________________________________________________________
consensus GTAATCCTATAGTTTATGGTATAACAATAATATATTCATACTGATTTCTCTTTGTGAGCT

. : . : . : . : . : . :
rJMSF038N17+ GAGGCAACACTGAATTTCTTCAGAGTCTGCTTTTTTTCCCAACAATTTCTGCAATCACCT
rJMSF017P14+ GAGGCAACACTGAATTTCTTCAGAGTCTGCTTTTTTTCCCAACAATTTCTGCAATCACCT
rJMSF020H12+ GAGGCAACACTGAATTTCTTCAGAGTCTGCTTTTTTTCCCAACAATTTCTGCAATCACCT
rJMSF009B20+ GAGGCAACACTGAATTTCTTCAGAGTCTGCTTTTTTTCCCAACAATTTCTGCAATCACCT
____________________________________________________________
consensus GAGGCAACACTGAATTTCTTCAGAGTCTGCTTTTTTTCCCAACAATTTCTGCAATCACCT

. : . : . : . : . : . :
rJMSF038N17+ GTCCTACTTCTTCCCCGCTATCTTCTTGAACATGATGACCGGCCATGGGAAGCTCGACTA
rJMSF017P14+ GTCCTACTTCTTCCCCGCTATCTTCTTGAACATGATGACCGGCCATGGGAAGCTCGACTA
rJMSF020H12+ GTCCTACTTCTTCCCCGCTATCTTCTTGAACATGATGACCGGCCATGGGAAGCTCGACTA
rJMSF009B20+ GTCCTACTTCTTCCCCGCTATCTTCTTGAACATGATGACCGGCCATGGGAAGCTCGACTA
____________________________________________________________
consensus GTCCTACTTCTTCCCCGCTATCTTCTTGAACATGATGACCGGCCATGGGAAGCTCGACTA

. : . : . : . : . : . :
rJMSF038N17+ GTCGGAGCTTTGATTCTTTGCAGAAATCTTCTACACCGTCGAAACTTAGCCAGCGGTCTC
rJMSF017P14+ GTCGGAGCTTTGATTCTTTGCAGAAATCTTCTACACCGTCGAAACTTAGCCAGCGGTCTC
rJMSF020H12+ GTCGGAGCTTTGATTCTTTGCAGAAATCTTCTACACCGTCGAAACTTAGCCAGCGGTCTC
rJMSF009B20+ GTCGGAGCTTTGATTCTTTGCAGAAATCTTCTACACCGTCGAAACTTAGCCAGCGGTCTC
____________________________________________________________
consensus GTCGGAGCTTTGATTCTTTGCAGAAATCTTCTACACCGTCGAAACTTAGCCAGCGGTCTC

. : . : . : . : . : . :
rJMSF038N17+ TTTGTCCCCAACATACCGTTGTTTGAACTTCCCAATTTTTGCCCGTGAGTATCCCTCGTG
rJMSF017P14+ TTTGTCCCCAACATACCGNTGTTTGAACTTCCCAATTTTTGCCCGTGAGTATCCCTCGTG
rJMSF020H12+ TTTGTCCCCAACATACCGTTGTTTGAACTTCCCAATTTTTGCCCGTGAGTATCCCTCGTG
rJMSF009B20+ TTTGTCCCCAACATACCGTTGTTTGAACTTCCCAATTTTTGCCCGTGAGTATCCCTCGTG
____________________________________________________________
consensus TTTGTCCCCAACATACCGTTGTTTGAACTTCCCAATTTTTGCCCGTGAGTATCCCTCGTG

. : . : . : . : . : . :
rJMSF038N17+ CTTCCTCAATGTACCCCTTAAGTTGCTTCTTCATTGCCCTACTTAGTGCGTTCAACGCAA
rJMSF017P14+ CTTCCTCAATGTACCCCTTAAGTTGCTTCTTCATTGCCCTACTTAGTGCGTTCAACGCAA
rJMSF020H12+ CTTCCTCAATGTACCCCTTAAGTTGCTTCTTCATTGCCCTACTTAGTGCGTTCAACGCAA
rJMSF009B20+ CTTCCTCAATGTACCCCTTAAGTTGCTTCTTCATTGCCCTACTTAGTGCGTTCAACGCAA
____________________________________________________________
consensus CTTCCTCAATGTACCCCTTAAGTTGCTTCTTCATTGCCCTACTTAGTGCGTTCAACGCAA

. : . : . : . : . : . :
rJMSF038N17+ ATCCTGATGATCCCGATGTAAGATATGGTCTCCTATATACCATGGCTACCTCTTCTTTCA
rJMSF017P14+ ATCCTGATAATCCCGATGTAAGATATGGTCTCCTATATACCATGGCTACCTCTTCTTTCA
rJMSF020H12+ ATCCTGATGATCCCGATGTAAGATATGGTCTCCTATATACCATGGCTACCTCTTCTTTCA
rJMSF009B20+ ATCCTGATGATCCCGATGTAAGATATGGTCTCCTATATACCATGGCTACCTCTTCTTTCA
____________________________________________________________
consensus ATCCTGATGATCCCGATGTAAGATATGGTCTCCTATATACCATGGCTACCTCTTCTTTCA

. : . : . : . : . : . :
rJMSF038N17+ TTTGGTAAGGACCACAGCTCAACAATGCCTTGTCACTCGCCCTTAGTGGATCCTTCACGA
rJMSF017P14+ TTTGGTAAGGACCACAGCTCAACAATGCCTTGTCACTCGCCCTTAGTGGATCCT
rJMSF020H12+ TTTGGTAAGGACCACAGCTCAACAATGCCTTGTCACTCGCCCTTAGTGGATCCT
rJMSF009B20+ TTTGGTAAGGACCACAGCTCAACAATGCCTTGTCACTCGCCCTTAGTGGATCCT
____________________________________________________________
consensus TTTGGTAAGGACCACAGCTCAACAATGCCTTGTCACTCGCCCTTAGTGGATCCTTCACGA

. : . : . : . : . : . :
rJMSF038N17+ GCAAAATTAAACGAAGTGTCGGGCTAAAAAGTTAAAAATTTTGTGAAGGCCGGGATGAAA
____________________________________________________________
consensus GCAAAATTAAACGAAGTGTCGGGCTAAAAAGTTAAAAATTTTGTGAAGGCCGGGATGAAA

. : . : . : . : . : . :
rJMSF038N17+ GTTAAGGTTATCCTACCTGAGAAAAGATTTCCCCAAGCAAGAAATTGCTGAATATGGATA
____________________________________________________________
consensus GTTAAGGTTATCCTACCTGAGAAAAGATTTCCCCAAGCAAGAAATTGCTGAATATGGATA

. : . : . : . : . : . :
rJMSF038N17+ AGGTTGAAGGCAGGTTTGCATGCTTGACTGTCAACGGAGGATTGAGAAGTATGACACTGT
____________________________________________________________
consensus AGGTTGAAGGCAGGTTTGCATGCTTGACTGTCAACGGAGGATTGAGAAGTATGACACTGT

. : . : . : . : . : . :
rJMSF038N17+ TCACCTTATCCTGATGAGTGCTGGCGTATTTGATAACAATAGGCGAAAATATCCCTGGAC
____________________________________________________________
consensus TCACCTTATCCTGATGAGTGCTGGCGTATTTGATAACAATAGGCGAAAATATCCCTGGAC

. : . : . : . : . : . :
rJMSF038N17+ TACAAGGGTAACCTTTTTTGTTAGTCAGTGGGGTTAATTACAGATTCCAAGGATGATACA
____________________________________________________________
consensus TACAAGGGTAACCTTTTTTGTTAGTCAGTGGGGTTAATTACAGATTCCAAGGATGATACA

. : . : . : . : . : . :
rJMSF038N17+ TATTCATCCAA
____________________________________________________________
consensus TATTCATCCAA