Alignment Contig 8596

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF037E11+ TTCAAGTTAGGGATTAAATATAGAACCAGC-GAGTTCTATGATATATATTTGACTAACTT
rJMSF044N18+ AGGGATTAAATATAGAACCAGCCGAGTTCTATGATATATATTTGACTAACTT
rJMSF028I02+ AGGGATTAAATATAGAACCAGC-GAGTTCTATGATATATATTTGACTAACTT
rJMSF015E13+ AGGGATTAAATATAGAACCAGC-GAGTTCTATGATATATATTTGACTAACTT
JMFN020E01- TAGAACCAGC-GAGTTCTATGATATATATTTGACTAACTT
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consensus TTCAAGTTAGGGATTAAATATAGAACCAGC-GAGTTCTATGATATATATTTGACTAACTT

. : . : . : . : . : . :
rJMSF037E11+ AGACTGTTAAAGCTTTTCCAATTCACAAAACCCTGAGAACGCAAAGTCACCAGTCTGATG
rJMSF044N18+ AGACTGTTAAAGCTTTTCCAATTCACAAAACCCTGAGAACGCAAAGTCACCAGTCTGATG
rJMSF028I02+ AGACTGTTAAAGCTTTTCCAATTCACAAAACCCTGAGAACGCAAAGTCACCAGTCTGATG
rJMSF015E13+ AGACTGTTAAAGCTTTTCCAATTCACAAAACCCTGAGAACGCAAAGTCACCAGTCTGATG
JMFN020E01- AGACTGTTAAAGCTTTTCCAATTCACAAAACCCTGAGAACGCAAAGTCACCAGTCTGATG
rJMSF018I01+ ACGCAAAGTCACCAGTCTGATG
rJMSF041A10+ AAGTCACCAGTCTGATG
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consensus AGACTGTTAAAGCTTTTCCAATTCACAAAACCCTGAGAACGCAAAGTCACCAGTCTGATG

. : . : . : . : . : . :
rJMSF037E11+ TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
rJMSF044N18+ TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
rJMSF028I02+ TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
rJMSF015E13+ TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
JMFN020E01- TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
rJMSF018I01+ TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
rJMSF041A10+ TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT
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consensus TGTACTGTTTTTTCAGACAATTTGTTATACTAATAGTAACAAATGTACTCAAAATCCCCT

. : . : . : . : . : . :
rJMSF037E11+ ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
rJMSF044N18+ ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
rJMSF028I02+ ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
rJMSF015E13+ ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
JMFN020E01- ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
rJMSF018I01+ ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
rJMSF041A10+ ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC
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consensus ACCAGTACCAGCACCTAAATAGATACCACAAGTCCTGGGGAATGTTGCAGCAAAAGTTCC

. : . : . : . : . : . :
rJMSF037E11+ ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
rJMSF044N18+ ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
rJMSF028I02+ ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
rJMSF015E13+ ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
JMFN020E01- ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
rJMSF018I01+ ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
rJMSF041A10+ ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG
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consensus ACTTCCCTGATGATGGATGCATAAGATTACCTTGCATAGATGAAGGTTCCAACCTTGACG

. : . : . : . : . : . :
rJMSF037E11+ GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
rJMSF044N18+ GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
rJMSF028I02+ GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
rJMSF015E13+ GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
JMFN020E01- GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
rJMSF018I01+ GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
rJMSF041A10+ GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC
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consensus GAAATGGAGAGGATTAGAACCCAGAAGAGAAGAAAGTAGAACCAACCCCCAGATAGCATC

. : . : . : . : . : . :
rJMSF037E11+ TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
rJMSF044N18+ TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
rJMSF028I02+ TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
rJMSF015E13+ TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
JMFN020E01- TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
rJMSF018I01+ TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
rJMSF041A10+ TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA
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consensus TTCCCGTGGCTCACTGGTTCCAAGCTGCCTGGACTTTGTGCACCTTGTGAGAAGTCGAAA

. : . : . : . : . : . :
rJMSF037E11+ GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
rJMSF044N18+ GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
rJMSF028I02+ GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
rJMSF015E13+ GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
JMFN020E01- GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
rJMSF018I01+ GAAAGGATGATGGTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
rJMSF041A10+ GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC
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consensus GAAAGGATGATGTTGTAATTGCCATGCTTGCTGCCGAGAGTCAGGTCGCTGATTTGAATC

. : . : . : . : . : . :
rJMSF037E11+ AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
rJMSF044N18+ AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
rJMSF028I02+ AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
rJMSF015E13+ AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
JMFN020E01- AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
rJMSF018I01+ AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
rJMSF041A10+ AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
JMFN020O12- AGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT
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consensus AGACCAGCAGTAACGTGCACTGAGCTTGATGCTTGGGTTGCTGCATTGAGGCGCAGAGCT

. : . : . : . : . : . :
rJMSF037E11+ GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
rJMSF044N18+ GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
rJMSF028I02+ GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
rJMSF015E13+ GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
JMFN020E01- GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
rJMSF018I01+ GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
rJMSF041A10+ GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG
JMFN020O12- GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGAAGCGGGTATGTTGCCCAACATTTGG
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consensus GCATCTTTTGGGATCTCTGATGCAAATGCTGGAGGAGCGGGTATGTTGCCCAACATTTGG

. : . : . : . : . : . :
rJMSF037E11+ CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
rJMSF044N18+ CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
rJMSF028I02+ CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
rJMSF015E13+ CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
JMFN020E01- CTGGC
rJMSF018I01+ CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
rJMSF041A10+ CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
JMFN020O12- CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT
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consensus CTGGCCTGCTTGATAAATGGATGTTGGAAGTCTGACCCCAATTTGGTGGGCTCTGGCTTT

. : . : . : . : . : . :
rJMSF037E11+ GACGATGATGC-AATATCATTCTTATGTTCAGTATCAACGGCCTTTTCGTTGGGCAAAAC
rJMSF044N18+ GACGATGATGCNAATATCATTCTTATGTTCAGTATCAACGG
rJMSF028I02+ GACGATGATGC-AATATCATTCTTATGTTCAG
rJMSF015E13+ GACGATGATGC-AATATCATTCTTATGTTCAGTATCAACGGCCTTTTCGTTGGGCAAAAC
rJMSF018I01+ GACGATGATGC-AATATCATTCTTATGTTCAGTATCAACGGCCTTTTCGTTGGGCAAAAC
rJMSF041A10+ GACGATGATGC-AATATCATTCTTATGTTCAGTATCAACGGCCTTTTCGTTGGGCAAAAC
JMFN020O12- GACGATGATGC-AATATCATTCTTATGTTCAGTATCAACGGCCTTTTCGTTGGGCAAAAC
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consensus GACGATGATGC-AATATCATTCTTATGTTCAGTATCAACGGCCTTTTCGTTGGGCAAAAC

. : . : . : . : . : . :
rJMSF037E11+ AGCCTGTTCAGTTGTGTCGCATGCATCCTTATCAGCAGAAGGTGATTGTTCT
rJMSF015E13+ AGCCTGTTCAGTTGTGTCGCATGCATCCTTATCAG
rJMSF018I01+ AGCCTGTTCAGTTGTGTCGCATGCATCCTTATCAGCAGAAGGTGATTGTTCTCCAAGAAA
rJMSF041A10+ AGCCTGTTCAGTTGTGTCGCATGCATCCTTATCAGCAGAAGGTGATTGTTCTCCAAGAAA
JMFN020O12- AGCCTGTTCAGTTGTGTCGCATGCATCCTTATCAGCAGAAGGTGATTGTTCTCCAAGAAA
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consensus AGCCTGTTCAGTTGTGTCGCATGCATCCTTATCAGCAGAAGGTGATTGTTCTCCAAGAAA

. : . : . : . : . : . :
rJMSF018I01+ CTCGTCATTTCCAATAAATATATCAGAATCAAACAGCATGTCTTGGAAATCATCCTTGGC
rJMSF041A10+ CTCATCATTTCCAATAAATATATCAGAATCAAACAGCATGTCTTGGAAATCATCCNTGGC
JMFN020O12- CTCATCATTTCCAATAAATATATCAGAATCAAACAGCATGTCTTGGAAATCATCCTTGGC
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consensus CTCATCATTTCCAATAAATATATCAGAATCAAACAGCATGTCTTGGAAATCATCCTTGGC

. : . : . : . : . : . :
rJMSF018I01+ ATCATA
rJMSF041A10+ ATCATAGAAATTTANGGAAGTCAAACATGTCGAAGCCTGANGTATT
JMFN020O12- ATCATAGAAATTAA-GGAAGTCAAACATGTCGAAGCCTGAGGTATTTCCTTCGACAGGAT
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consensus ATCATAGAAATTAANGGAAGTCAAACATGTCGAAGCCTGAGGTATTTCCTTCGACAGGAT

. : . : . : . : . : . :
JMFN020O12- TTGAAAGATCATTAGTTTCAAGAAATGTTCCATCATTGAACTGAAATCTGTCGGTAGTGT
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consensus TTGAAAGATCATTAGTTTCAAGAAATGTTCCATCATTGAACTGAAATCTGTCGGTAGTGT

. : . : . : . : . : . :
JMFN020O12- CCATGAGTGGTTCATTGAGTAAGCAATTCAAACTTTCAGAGGTCATGCTATTGCTAGACT
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consensus CCATGAGTGGTTCATTGAGTAAGCAATTCAAACTTTCAGAGGTCATGCTATTGCTAGACT

. : . : . : . : . : . :
JMFN020O12- CGCCCATGTACTCTCGTTTGACAGGCTTGGGATCAAAATCATGAATTGGTTGATCAAAGG
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consensus CGCCCATGTACTCTCGTTTGACAGGCTTGGGATCAAAATCATGAATTGGTTGATCAAAGG

. : . : . : . : . : . :
JMFN020O12- GCTTCAGCTCATCAGGATGTTGCTGTCCGCAAGG
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consensus GCTTCAGCTCATCAGGATGTTGCTGTCCGCAAGG