Alignment Contig 8594

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF037B19+ CAACGACTCTTGGAATTTCCATGCAACATAGCCGTCAGTGACGTTACAAGTACAGATTAC
rJMSF039C08+ TTACAAGTACAGATTAC
rJMSF019G19+ TTACAAGTACAGATTAC
rJMSF003N08+ TTACAAGTACAGATTAC
____________________________________________________________
consensus CAACGACTCTTGGAATTTCCATGCAACATAGCCGTCAGTGACGTTACAAGTACAGATTAC

. : . : . : . : . : . :
rJMSF037B19+ GGAGTACAAAATAGCATTTCGTCGAAGCACTATCCTTTTGAA-GGGGAAACCCCAAAACT
rJMSF039C08+ GGAGTACAAAATAGCATTTCGTCGAAGCACTATCCTTTTGAA-GGGGAAACCCCAAAACT
rJMSF019G19+ GGAGTACAAAATAGCATTTCGTCGAAGCACTATCCTTTTGAA-GGGGAAACCCCAAAACT
rJMSF003N08+ GGAGTACAAAATAGCATTTCGTCGAAGCACTATCCTTTTGAAAGGGGAAACCCCAAAACT
____________________________________________________________
consensus GGAGTACAAAATAGCATTTCGTCGAAGCACTATCCTTTTGAA-GGGGAAACCCCAAAACT

. : . : . : . : . : . :
rJMSF037B19+ ACAACATAAGAAGTAAAAAGAGTCAATGGCTGCAAGGACGAACAATGATCATATGCGTTC
rJMSF039C08+ ACAACATAAGAAGTAAAAAGAGTCAATGGCTGCAAGGACGAACAATGATCATATGCGTTC
rJMSF019G19+ ACAACATAAGAAGTAAAAAGAGTCAATGGCTGCAAGGACGAACAATGATCATATGCGTTC
rJMSF003N08+ ACAACATAAGAAGTAAAAAGAGTCAATGGCTGCAAGGACGAACAATGATCATATGCGTTC
____________________________________________________________
consensus ACAACATAAGAAGTAAAAAGAGTCAATGGCTGCAAGGACGAACAATGATCATATGCGTTC

. : . : . : . : . : . :
rJMSF037B19+ TCAATAGCCAATAGGGGCGGAATTATTATGCATTTTGGACAAAGCTTCTACTTTGTTCAA
rJMSF039C08+ TCAATAGCCAATAGGGGCGGAATTATTATGCATTTTGGACAAAGCTTCTACTTTGTTCAA
rJMSF019G19+ TCAATAGCCAATAGGGGCGGAATTATTATGCATTTTGGACAAAGCTTCTACTTTGTTCAA
rJMSF003N08+ TCAATAGCCAATAGGGGCGGAATTATTATGCATTTTGGACAAAGCTTCTACTTTGTTCAA
rJMFF007B21+ TATTAAGCATTTTGGACAAAGCTTCTACTTTGTTCAA
____________________________________________________________
consensus TCAATAGCCAATAGGGGCGGAATTATTATGCATTTTGGACAAAGCTTCTACTTTGTTCAA

. : . : . : . : . : . :
rJMSF037B19+ TTGGTAAACAAAAACCGCGGTCCTGTCAATCCGCGATCTGCAGAAGAGCCTTGCCTTGCA
rJMSF039C08+ TTGGTAAACAAAAACCGCGGTCCTGTCAATCCGCGATCTGCAGAAGAGCCTTGCCTTGCA
rJMSF019G19+ TTGGTAAACAAAAACCGCGGTCCTGTCAATCCGCGATCTGCAGAAGAGCCTTGCCTTGCA
rJMSF003N08+ TTGGTAAACAAAAACCGCGGTCCTGTCAATCCGCGATCTGCAGAAGAGCCTTGCCTTGCA
rJMFF007B21+ TTGGTAAACAAAAACCGGGGTCCTGTCAATCCACGATCTGCAGAAGAGCCTTGCCTTGCA
____________________________________________________________
consensus TTGGTAAACAAAAACCGCGGTCCTGTCAATCCGCGATCTGCAGAAGAGCCTTGCCTTGCA

. : . : . : . : . : . :
rJMSF037B19+ AGCTTCTGAATACGTGAAGAGAGATCCTCGGCCTTTTCATCAACCCAGACCAGTGAACTC
rJMSF039C08+ AGCTTCTGAATACGTGAAGAGAGATCCTCGGCCTTTTCATCAACCCAGACCAGTGAACTC
rJMSF019G19+ AGCTTCTGAATACGTGAAGAGAGATCCTCGGCCTTTTCATCAACCCAGACCAGTGAACTC
rJMSF003N08+ AGCTTCTGAATACGTGAAGAGAGATCCTCGGCCTTTTCATCAACCCAGACCAGTGAACTC
rJMFF007B21+ AGCGTCTGAATACGTGAAGAGAGATCCTCAGCCTTTTCATCAATCCAGACCAGTGAACTC
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consensus AGCTTCTGAATACGTGAAGAGAGATCCTCGGCCTTTTCATCAACCCAGACCAGTGAACTC

. : . : . : . : . : . :
rJMSF037B19+ AACTGATTGTTCAAAATGCGGACAACAACATCAAGTGGATTCACGCCATCAGTTAGTTCT
rJMSF039C08+ AACTGATTGTTCAAAATGCGGACAACAACATCAAGTGGATTCACGCCATCAGTTAGTTCT
rJMSF019G19+ AACTGATTGTTCAAAATGCGGACAACAACATCAAGTGGATTCACGCCATCAGTTAGTTCT
rJMSF003N08+ AACTGATTGTTCAAAATGCGGACAACAACATCAAGTGGATTCACGCCATCAGTTAGTTCT
rJMFF007B21+ AACTGATTGTTCAAAATGCGGACAACAACATCAAGTGGATTCACGCCATCGGTTAGTTCT
____________________________________________________________
consensus AACTGATTGTTCAAAATGCGGACAACAACATCAAGTGGATTCACGCCATCAGTTAGTTCT

. : . : . : . : . : . :
rJMSF037B19+ CCACCCTGGTTTGCATTAAGAGAATTAATGATCGACTTTATCTGCTCCATCATCTTTTCC
rJMSF039C08+ CCACCCTGGTTTGCATTAAGAGAATTAATGATCGACTTTATCTGCTCCATCATCTTTTCC
rJMSF019G19+ CCACCCTGGTTTGCATTAAGAGAATTAATGATCGACTTTATCTGCTCCATCATCTTTTCC
rJMSF003N08+ CCACCCTGGTTTGCATTAAGAGAATTAATGATCGACTTTATCTGCTCCATCATCTTTTCC
rJMFF007B21+ CCACCCTGGTTTGCATTAAGAGAATTAATGATCAACTTTATCTGCTCCATCATCTTTTCC
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consensus CCACCCTGGTTTGCATTAAGAGAATTAATGATCGACTTTATCTGCTCCATCATCTTTTCC

. : . : . : . : . : . :
rJMSF037B19+ ATTTCCCTCTCTACAAATTCTGCCTGTTCATACATTGCATCTCTTGTATATGCAGCTTCA
rJMSF039C08+ ATTTCCCTCTCTACAAATTCTGCCTGTTCATACATTGCATCTCTTGTATATGCAGCTTCA
rJMSF019G19+ ATTTCCCTCTCTACAAATTCTGCCTGTTCATACATTGCATCTCTTGTATATGCAGCTTCA
rJMSF003N08+ ATTTCCCTCTCTACAAATTCTGCCTGTTCATACATTGCATCTCTTGTATATGCAGCTTCA
rJMFF007B21+ ATTTCCCTCTCTACAAATTCTGCCTGTTCATACATTGCATCTCTTGTATATGCAGCTTCA
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consensus ATTTCCCTCTCTACAAATTCTGCCTGTTCATACATTGCATCTCTTGTATATGCAGCTTCA

. : . : . : . : . : . :
rJMSF037B19+ TCATCAAGAAGCATTTCACGCTCATCTTTATATATCCGTCCAGCTTCTTCTTCCATACTC
rJMSF039C08+ TCATCAAGAAGCATTTCACGCTCATCTTTATATATCCGTCCAGCTTCTTCTTCCATACTC
rJMSF019G19+ TCATCAAGAAGCATTTCACGCTCATCTTTATATATCCGTCCAGCTTCTTCTTCCATACTC
rJMSF003N08+ TCATCAAGAAGCATTTCACGCTCATCTTTATATATCCGTCCAGCTTCTTCTTCCATACTC
rJMFF007B21+ TCATCAAGAAGCATTTCACGCTCATCTTTATATATCCGTTCAGCTTCTTCTTCCATACTC
____________________________________________________________
consensus TCATCAAGAAGCATTTCACGCTCATCTTTATATATCCGTCCAGCTTCTTCTTCCATACTC

. : . : . : . : . : . :
rJMSF037B19+ TGCAATGCCTTGTCAACCTCATCTTGATGTGTCTCAATTAACTCAAGCTGTCGCTCTAGG
rJMSF039C08+ TGCAATGCCTTGTCAACCTCATCTTGATGTGTCTCAATTAACTCAAGCTGTCGCTCTAGG
rJMSF019G19+ TGCAATGCCTTGTCAACCTCATCTTGATGTGTCTCAATTAACTCAAGCTGTCGCTCTAGG
rJMSF003N08+ TGCAATGCCTTGTCAACCTCATCTTGATGTGTCTCAATTAACTCAAGCTGTCGCTCTAGG
rJMFF007B21+ TGCAATGCCTTGTCAACCTCATCTTGATGTGTCTCAATTAACTCAAGATGTCGATCTAGG
____________________________________________________________
consensus TGCAATGCCTTGTCAACCTCATCTTGATGTGTCTCAATTAACTCAAGCTGTCGCTCTAGG

. : . : . : . : . : . :
rJMSF037B19+ CTAGCCTGTGTCTCAACAACCTTTGCAACTTCACTCTCAAGC
rJMSF039C08+ CTAGCCTGTGTCTCAACAACCTTTGCAACTTCACTCTCAAGCTTAAGGAGGATATCACGG
rJMSF019G19+ CTAGCCTGTGTCTCAACAACCTTTGCAACTTCACTCTCAAGCTTAAGGAGGATATCACGG
rJMSF003N08+ CTAGCCTGTGTCTCAACAACCTTTGCAACTTCACTCTCAAGCTTAAGGAGGATATCACGG
rJMFF007B21+ CTAGCCTGTGTCTCAACAACCTTTGCAACTTCACTCTCAAGCTTAAGGA
____________________________________________________________
consensus CTAGCCTGTGTCTCAACAACCTTTGCAACTTCACTCTCAAGCTTAAGGAGGATATCACGG

. : . : . : . : . : . :
rJMSF039C08+ TTTTGTAAGATCCTCCTGTCCCATTCAGCAATTGCATTGGCTTGCTTTCGGAAATTTGTC
rJMSF019G19+ TTTTGTAAGATCCTCCTGTCCCATTCAGCAATTGCATTGGCT
rJMSF003N08+ TTTTGTAAGATCCTCCTGTCCCATTCAGCAATTGCATTGGCTTGCTTTCGGAAATTTGTC
____________________________________________________________
consensus TTTTGTAAGATCCTCCTGTCCCATTCAGCAATTGCATTGGCTTGCTTTCGGAAATTTGTC

. : . : . : . : . : . :
rJMSF039C08+ GTGCGCTCCTGCAGCTCTGCATTCCATTCCTTGATGACTTCCTCTATAGTTTTTCCGGTA
rJMSF003N08+ GNGCGCTCCTGCAGCTCTGCATTCCAT
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consensus GTGCGCTCCTGCAGCTCTGCATTCCATTCCTTGATGACTTCCTCTATAGTTTTTCCGGTA

. : . : . : . : . : . :
rJMSF039C08+ ATTTCAGATGGTAACTTAGGTGAGGTCCCTGTTGCAGCACTTGTACTC
____________________________________________________________
consensus ATTTCAGATGGTAACTTAGGTGAGGTCCCTGTTGCAGCACTTGTACTC