Alignment Contig 8558

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF028N18+ CTTCATTTGTGTTGAGAAAATGGCTTTTCTGAAATTTTTGAGAGATCACTATCCCAATAC
rJMSF039M13+ TATCCCAATAC
____________________________________________________________
consensus CTTCATTTGTGTTGAGAAAATGGCTTTTCTGAAATTTTTGAGAGATCACTATCCCAATAC

. : . : . : . : . : . :
rJMSF028N18+ AAGCTGAGATTTAGTGTGTTTCTGCTAAGTTAAAATCTTTTTCTTCCTTGTACTATTTAC
rJMSF001O17+ AGCTGAGATTTAGTGTGTTTCTGCTAAGTTAAAATCTTTTTCTTCCCTGTACTATTTAC
rJMSF039M13+ AAGCTGAGATTTAGTGTGTTTCTGCTAAGTTAATATCTTTTTCTTCCTTGTACTATTTAC
____________________________________________________________
consensus AAGCTGAGATTTAGTGTGTTTCTGCTAAGTTAAAATCTTTTTCTTCCTTGTACTATTTAC

. : . : . : . : . : . :
rJMSF028N18+ CATCTGAGTTCTCAAAATTTCAGACACTACATGCAGTATTCACAAATCACAATACCAGCT
rJMSF001O17+ CATCTGAGTTTTCAAAATTTCAGACACTACATGCAGTATTCACAAATCACAATACCAGCT
rJMSF039M13+ CATCTGAGTTTTCAAAATTTCAGACACTACATGCAGTATTCACAAATCACAATACCAGCT
rJMSF024I14+ AAATTTCAGACACTACATGCAGTATTCACAAATCACAATACCAGCT
____________________________________________________________
consensus CATCTGAGTTTTCAAAATTTCAGACACTACATGCAGTATTCACAAATCACAATACCAGCT

. : . : . : . : . : . :
rJMSF028N18+ TCTTATTTCCTGAATGCAAAAAAGGCTTAGCCTTACCACTGATACTTAGCAGCCACAAGA
rJMSF001O17+ TCTTATTTCCTGAATGCAAAAAAGGCTTAGCCTTACCACTGATACTTAGCAGCCACAAGA
rJMSF039M13+ TCTTATTTCCTGAATGCAAAAAAGGCTTAGCCTTACCACTGATACTTAGCAGCCACAAGA
rJMSF024I14+ TCTTATTTCCTGAATGCAAAAAAGGCTTAGCCTTACCACTGATACTTAGCAGCCACAAGA
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consensus TCTTATTTCCTGAATGCAAAAAAGGCTTAGCCTTACCACTGATACTTAGCAGCCACAAGA

. : . : . : . : . : . :
rJMSF028N18+ ACTTCTTCATAATTCTGAGCAGCATGATCCCAGCTTAAGTCTTGCATCATCCCGCGCTTT
rJMSF001O17+ ACTTCTTCATAATTCTGAGCAGCATGATCCCAGCTTAAGTCTTGCATCATCCCGCGCTTT
rJMSF039M13+ ACTTCTTCATAATTCTGAGCAGCATGATCCCAGCTTAAGTCTTGCATCATCCCGCGCTTT
rJMSF024I14+ ACTTCTTCATAATTCTGAGCAGCATGATCCCAGCTTAAGTCTTGCATCATCCCGCGCTTT
____________________________________________________________
consensus ACTTCTTCATAATTCTGAGCAGCATGATCCCAGCTTAAGTCTTGCATCATCCCGCGCTTT

. : . : . : . : . : . :
rJMSF028N18+ TGCAGGCCCTCCCAGCTCTTCTTGTACTGACGATATGTCAGCAAGCAATTCCCCAATGCA
rJMSF001O17+ TGCAGGCCCTCCCAGCTCTTCTTGTACTGACGATATGTCAGCAAGCAATTCCCCAATGCA
rJMSF039M13+ TGCAGGCCCTCCCAGCTCTTCTTGTACTGACGATATGTCAGCAAGCAATTCCCCAATGCA
rJMSF024I14+ TGCAGGCCCTCCCAGCTCTTCTTGTACTGACGATATGTCAGCAAGCAATTCCCCAATGCA
____________________________________________________________
consensus TGCAGGCCCTCCCAGCTCTTCTTGTACTGACGATATGTCAGCAAGCAATTCCCCAATGCA

. : . : . : . : . : . :
rJMSF028N18+ TGGATCAGCTGCTCTGCCTCAGCCCTATCGAATGTCCACCCGAGCCCTGTCTCATTATAA
rJMSF001O17+ TGGATCAGCTGCTCTGCCTCAGCCCTATCGAATGTCCACCCGAGCCCTGTCTCATTATAA
rJMSF039M13+ TGGATCAGCTGCTCTGCCTCAGCCCTATCGAATGTCCACCCGAGCCCTGTCTCATTATAA
rJMSF024I14+ TGGATCAGCTGCTCTGCCTCAGCCCTATCGAATGTCCACCCGAGCCCTGTCTCATTATAA
____________________________________________________________
consensus TGGATCAGCTGCTCTGCCTCAGCCCTATCGAATGTCCACCCGAGCCCTGTCTCATTATAA

. : . : . : . : . : . :
rJMSF028N18+ GGATCGAAGGGTACGACTGTATCTCGTAGCCCACCCACAGCATGGACGACGGGGACAGTG
rJMSF001O17+ GGATCGAAGGGTACGACTGTATCTCGTAGCCCACCCACAGCATGGACGACGGGGACAGTG
rJMSF039M13+ GGATCGAAGGGTACGACTGTATCTCGTAGCCCACCCACAGCATGGACGACGGGGACAGTG
rJMSF024I14+ GGATCGAAGGGTACGACTGTATCTCGTAGCCCACCCACAGCATGGACGACGGGGACAGTG
____________________________________________________________
consensus GGATCGAAGGGTACGACTGTATCTCGTAGCCCACCCACAGCATGGACGACGGGGACAGTG

. : . : . : . : . : . :
rJMSF028N18+ CCATAGGACATAGCATACAGTTGGTTTAGTCCACAAGGCTCAAATCTTGATGGCATAAGC
rJMSF001O17+ CCATAGGACATAGCATACAGTTGGTTTAGTCCACAAGGCTCAAATCTTGATGGCATAAGC
rJMSF039M13+ CCATAGGACATAGCATACAGTTGGTTTAGTCCACAAGGCTCAAATCTTGATGGCATAAGC
rJMSF024I14+ CCATAGGACATAGCATACAGTTGGTTTAGTCCACAAGGCTCAAATCTTGATGGCATAAGC
____________________________________________________________
consensus CCATAGGACATAGCATACAGTTGGTTTAGTCCACAAGGCTCAAATCTTGATGGCATAAGC

. : . : . : . : . : . :
rJMSF028N18+ AGAATGTCTGCACCAGCAGTTATCCGGTGTGAAGTCTTTACAGAGAACCCCACCCATCCT
rJMSF001O17+ AGAATGTCTGCACCAGCAGTTATCCGGTGTGAAGTCTTTACAGAGAACCCCACCCATCCT
rJMSF039M13+ AGAATGTCTGCACCAGCAGTTATCCGGTGTGAAGTCTTTACAGAGAACCCCACCCATCCT
rJMSF024I14+ AGAATGTCTGCACCAGCAGTTATCCGGTGTGAAGTCTTTACAGAGAACCCCACCCATCCT
____________________________________________________________
consensus AGAATGTCTGCACCAGCAGTTATCCGGTGTGAAGTCTTTACAGAGAACCCCACCCATCCT

. : . : . : . : . : . :
rJMSF028N18+ CTGACTTTGTCGTTGTGCTGATACTCAAACTGCCTGAGCAATTGTTCTAGGTCGGGCCTG
rJMSF001O17+ CTGACTTTGTCGTTGTGCTGATACTCAAACTGCCTGAGCAATTGTTCTAGGTCGGGCCTG
rJMSF039M13+ CTGACTTTGTCGTTGTGCTGATACTCAAACTGCCTGAGCAATTGTTCTAGGTCGGGCCTG
rJMSF024I14+ CTGACTTTGTCGTTGTGCTGATACTCAAACTGCCTGAGCAATTGTTCTAGGTCGGGCCTG
____________________________________________________________
consensus CTGACTTTGTCGTTGTGCTGATACTCAAACTGCCTGAGCAATTGTTCTAGGTCGGGCCTG

. : . : . : . : . : . :
rJMSF028N18+ CCTGTGCCCAACATAACCACCTGCACGTCCTCGCCCATCATCCAGGGGATTGCCTC
rJMSF001O17+ CCTGTGCCCAACATAACCACCTGCACGTCCTCGCCCATCAT
rJMSF039M13+ CCTGTGCCCAACATAACCACCTGCACGTCCTCGCCCATCATCCAAGGGATTGCCTCAGCT
rJMSF024I14+ CCTGTGCCCAACATAACCACCTGCACGTCCTCGCCCATCATCCAAGGGATTGCCTCAGCT
____________________________________________________________
consensus CCTGTGCCCAACATAACCACCTGCACGTCCTCGCCCATCATCCAAGGGATTGCCTCAGCT

. : . : . : . : . : . :
rJMSF039M13+ ATCAGATCAACGCCTTTCTGGTAATCAAGCCTCCCAATGAAACCAATCAGCGGGACATCT
rJMSF024I14+ ATCAGATCAACGCCTTTCTGGTAATCAAGCCTCCCAATGAAACCAATCAGCGGGACATCT
____________________________________________________________
consensus ATCAGATCAACGCCTTTCTGGTAATCAAGCCTCCCAATGAAACCAATCAGCGGGACATCT

. : . : . : . : . : . :
rJMSF039M13+ GGGCGCACAGGCAAACCGAGTTCCTTTTGCAGTGCTGCTTTGCATTTAGGTTTACCAGTC
rJMSF024I14+ GGGCGCACAGGCAAACCGAGTTCCTTTTGCAGTGCTGCTTTGCATTTAGGTTTACCAGTC
____________________________________________________________
consensus GGGCGCACAGGCAAACCGAGTTCCTTTTGCAGTGCTGCTTTGCATTTAGGTTTACCAGTC

. : . : . : . : . : . :
rJMSF039M13+ TGCAATGTCTCCAGGGAATAGTTNAACATAACCATCCGACTTCAAGTGAACATCCAGCAG
rJMSF024I14+ TGCA-TGTCTCCAGGGAATAGTT-AACATAACCATCCGACTTCAAGTGAACATCC
____________________________________________________________
consensus TGCAATGTCTCCAGGGAATAGTTNAACATAACCATCCGACTTCAAGTGAACATCCAGCAG

. : . : . : . : . : . :
rJMSF039M13+ TGGGTTCCACTCATTCGTATC
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consensus TGGGTTCCACTCATTCGTATC