Alignment Contig 8475

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF013J09+ GACATCGATCATTCTTCGTTCNCNNTATCGNCATCAATCNTTGCCCCTTTGGCNATATGT
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consensus GACATCGATCATTCTTCGTTCNCNNTATCGNCATCAATCNTTGCCCCTTTGGCNATATGT

. : . : . : . : . : . :
rJMSF013J09+ ANCTTGTCAATCTCAACNTTGACNTCTTTCANCACCTTAGGCTTANGTGGTCCAGCTGAT
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consensus ANCTTGTCAATCTCAACNTTGACNTCTTTCANCACCTTAGGCTTANGTGGTCCAGCTGAT

. : . : . : . : . : . :
rJMSF013J09+ GCATCGGTGGCCTCGTTTGGCCCAGTCTGCCATATTCTAATTGTCCCGTCTNCAGAACCT
rJMSF026A20+ CCAGTCTGCCATATTCTAATTGTCCCGTCTTCNGAACCT
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consensus GCATCGGTGGCCTCGTTTGGCCCAGTCTGCCATATTCTAATTGTCCCGTCTTCAGAACCT

. : . : . : . : . : . :
rJMSF013J09+ GAANCANAAGATTCNCCTCCTGGAGAGAAACGCACACAATGCACAGGACCATGGTGTCCC
rJMSF026A20+ GAANCANAANANTCTCCTCCTGGAGAGAAACGCACACNATGCACAGGACCATGGTGTCCC
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consensus GAANCANAAGATTCTCCTCCTGGAGAGAAACGCACACAATGCACAGGACCATGGTGTCCC

. : . : . : . : . : . :
rJMSF013J09+ TTGTTGCATCCAATTTGTTCTCCAGNGTGAAAGTCAAAGAGACGAANCCN-CATGTCTTC
rJMSF013J01+ AAGAGACGAACCCA-CATGTCTTC
rJMSF026A20+ TTGTTGCATCCNATTTGTTCTCCAGNGTGAAAGTCAAAGAGACGAACCCCNCATGTCTAC
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consensus TTGTTGCATCCAATTTGTTCTCCAGNGTGAAAGTCAAAGAGACGAACCCA-CATGTCTTC

. : . : . : . : . : . :
rJMSF013J09+ CACTCCGGCAATGAACCTTTTTCCGAACCTTGGTTCTAATGAAGCAGATTCAACATTGCA
rJMSF013J01+ CCCTCCGGCAATGAACCTTTTTCCGAACCTTGGTTCTAATGAAGCAGATTCAACATTGCA
rJMSF026A20+ CCCTCCGGCAATGAACCTTTTTCCGAACCTTGGTTCTAATGAAGCAGATTCAACATTGCA
rJMFF019K24+ TCTAATGAAGCAGATTCAACATTGCA
rJMSF018J08+ CTCCGGCAATGAACCNTTTTCCGAACCTTGGTTCTAATGAAGCAGATTCAACATTGCA
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consensus CCCTCCGGCAATGAACCTTTTTCCGAACCTTGGTTCTAATGAAGCAGATTCAACATTGCA

. : . : . : . : . : . :
rJMSF013J09+ GGGCATGTCATAGCTCTTTACCAATCTAAATTGATTTGCATCCCAAAACTTAACAGAGGA
rJMSF013J01+ GGGCATGTCATAGCTCTTTACCAATCTAAATTGATTTGCATCCCAAAACTTAACAGAGGA
rJMSF026A20+ GGGCATGTCATAGCTCTTTACCAATCTAAATTGATTTGCATCCCAAAACTTAACAGAGGA
rJMFF019K24+ GGGCATGTCATAGCTCTTTACCAATCTAAATTGATTTGCATCCCAAAACTTAACAGAGGA
rJMSF018J08+ GGGCATGTCATAGCTCTTTACCAATCTAAATTGATTTGCATCCCAAAACTTAACAGAGGA
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consensus GGGCATGTCATAGCTCTTTACCAATCTAAATTGATTTGCATCCCAAAACTTAACAGAGGA

. : . : . : . : . : . :
rJMSF013J09+ ACCATCAGCAGTAGTTATGTAGTGGCCATCTCGACTCACTTCAGCACTGGTTACAGAAGA
rJMSF013J01+ ACCATCAGCAGTAGTTATGTAGTGGCCATCTCGACTCACTTCAGCACTGGTTACAGAAGA
rJMSF026A20+ ACCATCAGCAGTAGTTATGTAGTGGCCATCTCGACTCACTTCAGCACTGGTTACAGAAGA
rJMFF019K24+ ACCATCANCAGTAGTTATGTAGTGGCCATCTCGACTCACTTCANCACTGGTTACAGAANA
rJMSF018J08+ ACCATCAGCAGTAGTTATGTAGTGGCCATCTCGACTCACTTCAGCACTGGTTACAGAAGA
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consensus ACCATCAGCAGTAGTTATGTAGTGGCCATCTCGACTCACTTCAGCACTGGTTACAGAAGA

. : . : . : . : . : . :
rJMSF013J09+ CTTGGTATCAAGGGTTCGAACAACTTCACAGCTTCTTAAATCCCATAATCTCACTCCACT
rJMSF013J01+ CTTGGTATCAAGGGTTCGAACAACTTCACAGCTTCTTAAATCCCATAATCTCACTCCACT
rJMSF026A20+ CTTGGTATCAAGGGTTCGAACAACTTCACAGCTTCTTAAATCCCATAATCTCACTCCACT
rJMFF019K24+ CTTGGTATCAAGGGTTCNAACAACTTCACAGCTTCTTAAATCCCATAATCTCACTCCACT
rJMSF018J08+ CTTGGTATCAAGGGTTCGAACAACTTCACAGCTTCTTAAATCCCATAATCTCACTCCACT
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consensus CTTGGTATCAAGGGTTCGAACAACTTCACAGCTTCTTAAATCCCATAATCTCACTCCACT

. : . : . : . : . : . :
rJMSF013J09+ CGTATCACTGCAGGAACTTAATATGGTTTGGTCATTATGGAGCCAAGCAACTGTCCTAAC
rJMSF013J01+ CGTATCACTGCAGGAACTTAATATGGTTTGGTCATTATGGAGCCNAGCAACTGTCCT
rJMSF026A20+ CGTATCACTGCAGGAACTTAATATGGTTTGGTCATTATGGAGCCAAGCAACTGTCCTAAC
rJMFF019K24+ CGNATCACTGCAGGAACTTAATATGG
rJMSF018J08+ CGTATCACTGCAGGAACTTAATATGGTTTGGTCATTATGGAGCCAAGCAACTGTCCTAAC
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consensus CGTATCACTGCAGGAACTTAATATGGTTTGGTCATTATGGAGCCAAGCAACTGTCCTAAC

. : . : . : . : . : . :
rJMSF018J08+ CGAACCAGGACCACCGTCAATTTGCCTTGGTGGTGCATCTGGTCGAT
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consensus CGAACCAGGACCACCGTCAATTTGCCTTGGTGGTGCATCTGGTCGAT