Alignment Contig 8463

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF010O12+ CCATCAATGGAGAAAGAATGGTGGAAGGGGAGGGAGGATTCAAGATTCAAGAAACAAAGG
rJMSF011O12+ AATGGTGGAAGGGGAGGGAGGATTCAAGATTCAAGAAACAAAGG
____________________________________________________________
consensus CCATCAATGGAGAAAGAATGGTGGAAGGGGAGGGAGGATTCAAGATTCAAGAAACAAAGG

. : . : . : . : . : . :
rJMSF010O12+ AAAATGGGAAAAGACTCAATTTTTTTTTGGAGATCCTAATTAAGGTTATAATTTACAGGT
rJMSF011O12+ AAAATGGGAAAAGACTCAATTTTTTTTTGGAGATCCTAATTAAGGTTATAATTTACAGGT
rJMSF043C07+ GGTTATAATTTACAGGT
rJMSF008G08+ CAGGT
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consensus AAAATGGGAAAAGACTCAATTTTTTTTTGGAGATCCTAATTAAGGTTATAATTTACAGGT

. : . : . : . : . : . :
rJMSF010O12+ CAGGATGATGAGAATGAAAAATAAACAAATTAAATTGCTCATCAGAACGATGTTCTGCAG
rJMSF011O12+ CAGGATGATGAGAATGAAAAATAAACAAATTAAATTGCTCATCANAACGATGTTCTGCAN
rJMSF043C07+ CAGGATGATGAGAATGAAAAATAAACAAATTAAATTGCTCATCAGAACGATGTTCTGCAG
rJMSF008G08+ CAGGATGATGAGAATGAAAAATAAACNNATTAAATTGCTCATCANAACGATGTTCTGCAN
rJMFF035F17+ AATTGCTCATCAGAACGATGTTCTGCAG
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consensus CAGGATGATGAGAATGAAAAATAAACAAATTAAATTGCTCATCAGAACGATGTTCTGCAG

. : . : . : . : . : . :
rJMSF010O12+ ATTTTTCCTCAGATCAGAGCACTAATCATTAAGAACAGTCGAAACAGAAGATCTAAAATA
rJMSF011O12+ ATTTTTCCTCAGATCAGAGCACTAATCATTAAGAACAGTCGAAACAGAAGATCTAAAATA
rJMSF043C07+ ATTTTTCCTCAGATCAGAGCACTAATCATTAAGAACAGTCGAAACAGAAGATCTAAAATA
rJMSF008G08+ ATTTTTCCTCNNATCANAGCACTAATCATTAAAAACAGTCGAANCANAANATCTAAAATA
rJMFF035F17+ ATTTTTCCTCAGATCAGAGCACTAATCATTAAGAACAGTCGAAACAGAAGATCTAAAATA
rJMFF026D03+ GTCGAAACAGAAGATCTAAAATA
rJMFF013B09+ AGATCTAAAATA
____________________________________________________________
consensus ATTTTTCCTCAGATCAGAGCACTAATCATTAAGAACAGTCGAAACAGAAGATCTAAAATA

. : . : . : . : . : . :
rJMSF010O12+ GGCTCTTTGTGAATAAGCAGTAGCTAAGATAGAACAGTACTGGCCTCACCATAGTTGGTT
rJMSF011O12+ GGCTCTTTGTGAATAAGCAGTAGCTAAGATAGAACAGTACTGGCCTCACCATAGTTGGTT
rJMSF043C07+ GGCTCTTTGTGAATAAGCAGTAGCTAAGATAGAACAGTACTGGCCTCACCATAGTTGGTT
rJMSF008G08+ GGCTCTTTGNGAATAAGCANTAGCTAAGATAGAACAGTACTGGCCTCNCCATAGTTGGTT
rJMFF035F17+ GGCTCTTTGTGAATAAGCAGTAGCTAAGATAGAACAGTACTGGCCTCACCATAGTTGGTT
rJMFF026D03+ GGCTCTTTGTGAATAAGCAGTAGCTAAGATAGAACAGTACTGGCCTCACCATAGTTGGTT
rJMFF013B09+ GGCTCTTTGTGAATAAGCAGTAGCTANGATAGAACAGTACTGGCCTCACCATAGTTGGTT
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consensus GGCTCTTTGTGAATAAGCAGTAGCTAAGATAGAACAGTACTGGCCTCACCATAGTTGGTT

. : . : . : . : . : . :
rJMSF010O12+ GTGTTTCCTGCAAATTTTGCCGCAGATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMSF011O12+ GTGTTTCCTGCAAATTTTGCCGCAGATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMSF043C07+ GTGTTTCCTGCAAATTTTGCCGCANATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMSF008G08+ GNGTTTCCTGCAAATTTTGCCGCAAATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMFF035F17+ GTGTTTCCTGCAAATTTTGCCGCAGATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMFF026D03+ GTGTTTCCTGCAAATTTTGCCGCAGATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMFF019C09+ GTGTTTCCTGCANATTTTGCCGCANATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
rJMFF013B09+ GTGTTTCCTGCANATTTTGCCGCAGATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG
____________________________________________________________
consensus GTGTTTCCTGCAAATTTTGCCGCAGATTCTAAAATCTTTTTTATTCTCCCCTTCCACGTG

. : . : . : . : . : . :
rJMSF010O12+ CCGGATCAGGAAGAAGACGACGACCCATTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG
rJMSF011O12+ CCGGATCAGGAANAAGACGACGACCCNTTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG
rJMSF043C07+ CCGGATCAGGAAGAAGACGACGACCCATTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG
rJMSF008G08+ CCGGATCAGGAANAAGACGACGACCCATTGGCGGCGANAACGTCNCCGCTGTGGAGGGCG
rJMFF035F17+ CCGGATCAGGAAGAAGACGACGACCCATTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG
rJMFF026D03+ CCGGATCAGGAAGAAGACGACGACCCATTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG
rJMFF019C09+ CCGGATCNNGAAGAAGACGACGACCCNTTGGCGGCGAGAACGT
rJMFF013B09+ CCGGATCANGAAGAAGACGACNACCCATTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG
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consensus CCGGATCAGGAAGAAGACGACGACCCATTGGCGGCGAGAACGTCGCCGCTGTGGAGGGCG

. : . : . : . : . : . :
rJMSF010O12+ TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
JMSF011O12- TCTGGACGGAGGTTGAAGTCGGAG
rJMSF011O12+ TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
rJMSF043C07+ TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
JMSF010O12- AGTCGGAG
rJMSF008G08+ TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
rJMFF035F17+ TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
rJMFF026D03+ TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
rJMFF013B09+ TACTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG
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consensus TAGTGGTTTTGGCTATGGCTGCCGTTGTTGTTGCTTTCTGGACGGAGGTTGAAGTCGGAG

. : . : . : . : . : . :
rJMSF010O12+ GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
JMSF011O12- GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
rJMSF011O12+ GTGAGTGGGGCGGANTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
rJMSF043C07+ GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
JMSF010O12- GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
rJMSF008G08+ GTGANTGGGGCGGAGTTTACGCGGCCNATGTCAAAACCNANACTGTGAGCATTTCCGTTA
rJMFF035F17+ GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
rJMFF026D03+ GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA
rJMFF013B09+ GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCNAAACCGAGACTGTGAGCATTTCCGTTA
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consensus GTGAGTGGGGCGGAGTTTACGCGGCCGATGTCGAAACCGAGACTGTGAGCATTTCCGTTA

. : . : . : . : . : . :
rJMSF010O12+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTATCTTGCCGACAGTGTTC
JMSF011O12- TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTATCTTGCCGACAGTGTTC
rJMSF011O12+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTATCTTGCCGACAGTGTTC
rJMSF043C07+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTCTCTTGCCGACAGTGTTC
JMSF010O12- TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTATCTTGCCGACAGTGTTC
rJMSF008G08+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGNGATGTTATCTCTCTTGCCNACNGTGTTC
rJMFF035F17+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTCTCTTGCCGACAGTGTTC
rJMFF026D03+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTCTCTTGCCGACAGTGTTC
rJMFF013B09+ TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGNTGATGTTATCTCTCTTG
____________________________________________________________
consensus TCGGCGGCGGCGGCGGCTGCGGGGGTGGTGGTGATGTTATCTATCTTGCCGACAGTGTTC

. : . : . : . : . : . :
rJMSF010O12+ TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
JMSF011O12- TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
rJMSF011O12+ TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCANAAA
rJMSF043C07+ TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
JMSF010O12- TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
rJMSF008G08+ TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
rJMFF035F17+ TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
rJMFF026D03+ TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA
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consensus TTGTTGTTATGCATCCAGACCTTTAAAACTCCTCTCTCGACTCCAATTTCACGGCAGAAA

. : . : . : . : . : . :
rJMSF010O12+ TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCC
JMSF011O12- TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCC
rJMSF011O12+ TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATC
rJMSF043C07+ TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCCGATCCTCTCCGCGAAATCC
JMSF010O12- TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCC
rJMSF008G08+ TCGTTGATCAGTTCTTCGTCNCTCTTCTGAATCTTCCACCCGATCCTCTCCGCGAAATCC
rJMFF035F17+ TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCCGATCCTCTCCGCGAAATCC
rJMFF026D03+ TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCCGATCCTCTCCGCGAAATCC
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consensus TCGTTGATCAGTTCTTCGTCTCTCTTCTGAATCTTCCACCCGATCCTCTCCGCGAAATCC

. : . : . : . : . : . :
rJMSF043C07+ AGCATTTTACCTTT
rJMSF008G08+ ANCATTTTACCTTTCTGAACTTGGGTGAATTTTGTTCGGAACCNCTTTCTCCCTTTCATG
rJMFF035F17+ AGCATTTTACCTTTCTGATCTTGGGTGAATTTTGTTCGGAACCGCTTTCTCCCTTTCATG
rJMFF026D03+ AGCATTTTACCTTTCTGATCTTGGGTGAATTTTGTTCGGAACCGCTTTCTCCCTTTCATG
____________________________________________________________
consensus AGCATTTTACCTTTCTGATCTTGGGTGAATTTTGTTCGGAACCGCTTTCTCCCTTTCATG

. : . : . : . : . : . :
rJMSF008G08+ TG
rJMFF035F17+ TGTGGTGATGGGTGGATGGATGANGG
rJMFF026D03+ TGTGGTGATGGGTGGATGGATGA
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consensus TGTGGTGATGGGTGGATGGATGANGG