Alignment Contig 8385

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049G06+ ACCCTGGAGAGXXXXXXXXXXXXXXXXXXXXATCAAATTTGAAAGAGTTCCCTAACAGCT
rJMFF030P03+ TACTCTATTTATCAAATTTGAAAGAGTTCCCTAACAGCT
rJMFF029F20+ TACTCTATTTATCAAATTTGAAAGAGTTCCCTAACAGCT
rJMFF006P04+ TACTCTATTTATCAAATTTGAAAGAGTTCCCTAACAGCT
rJMFF010A02+ TACTCTATTTATCAAATTTGAAAGAGTTCCCTAACAGCT
rJMFF025G18+ CTATTTATCNAATTTGAAAGAGTTCCCTAACAGCT
rJMFF001O24+ AATTTGAAAGAGTTCCCTAACAGCT
____________________________________________________________
consensus ACCCTGGAGAGNNNNNNNNNNTACTCTATTTATCAAATTTGAAAGAGTTCCCTAACAGCT

. : . : . : . : . : . :
rJMFF049G06+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF030P03+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF029F20+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF006P04+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF010A02+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF025G18+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF030B03+ ATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF038G08+ TCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
rJMFF001O24+ CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC
____________________________________________________________
consensus CATCATCATCTCTGTTCGCTTATTTATACAGTTCAACATTCTTATCTCTCTCTCTCTCTC

. : . : . : . : . : . :
rJMFF049G06+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF030P03+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF029F20+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF006P04+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF010A02+ AACTCTGGAGGTGCAAAAAAAAAAATTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF025G18+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF030B03+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF038G08+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
rJMFF001O24+ AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA
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consensus AACTCTGGAGGTGCAAAAAAAAAA-TTACAATAAACTCTGCCCAATCTATCACTATAATA

. : . : . : . : . : . :
rJMFF049G06+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF030P03+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF029F20+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF006P04+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF010A02+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF025G18+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF030B03+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF038G08+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
rJMFF001O24+ ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG
____________________________________________________________
consensus ACGTTTGAGTACTTCCCTCAAACTCCTTATTTGCTATCTACAAACAAAGCAACTTGCTTG

. : . : . : . : . : . :
rJMFF049G06+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF030P03+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF029F20+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF006P04+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF010A02+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF025G18+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF030B03+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF038G08+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
rJMFF001O24+ CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC
____________________________________________________________
consensus CTTCATCACCACCCCCAAAATCTCATTCCTTCCTCTCTGCTGCACCAACTTCCTTCTGCC

. : . : . : . : . : . :
rJMFF049G06+ CAAATCTTCACAGCTTTGCCTGTGAATACAAAAAAGTTCCAAGAATAGCGATGGCAGCTC
rJMFF030P03+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAANAATAGCGATGGCAGCTC
rJMFF029F20+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAANAATAGCGATGGCAGCTC
rJMFF006P04+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAANAATAGCGATGGCAGCTC
rJMFF010A02+ CAAATCTTCACAGCTTTGCCTGTGAATACAAAAAAGTTCCAAAAATAGCGATGGCAGCTC
rJMFF025G18+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAANAATAGCGATGGCAGCTC
rJMFF030B03+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAANAATAGCGATGGCAGCTC
rJMFF038G08+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAAGAATAGCGATGGCAGCTC
rJMFF001O24+ CAAATCTTCACAGCTTTGCCTGTGAATACAANAAAGTTCCAANAATAGCGATGGCAGCTC
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consensus CAAATCTTCACAGCTTTGCCTGTGAATACAAAAAAGTTCCAAGAATAGCGATGGCAGCTC

. : . : . : . : . : . :
rJMFF049G06+ CTAGAGCATTGACAGGCTGGACTGGTGTCCGGAAGATAATGATGGACGAGACAATAACAG
rJMFF030P03+ CTANAGCATTGACAGGCTGGACTGGTGTCCGGAANATAATGATGGACGAGACAATAACAG
rJMFF029F20+ CTANAGCATTGACAGGCTGGACTGGTGTCCGGAANATAATGATGGACGAGACAATAACAG
rJMFF006P04+ CTAAAGCATTGACAGGCTGGACTGGTGTCCGGAANATAATGATGGACGANACAATAACAN
rJMFF010A02+ CTAAAGCATTGACAGGCTGGACTGGTGTCCGGAAAATAATGATGGACGANACAATAACAN
rJMFF025G18+ CTAAAGCATTGACAGGCTGGACTGGTGTCCGGAANATAATGATGGACGAGACAATAACAG
rJMFF030B03+ CTANAGCATTGACAGGCTGGACTGGTGTCCGGAANATAATGATGGACGAGACAATAACAG
rJMFF038G08+ CTANAGCATTGACAGGCTGGACTGGTGTCCGGAAGATAATGATGGACGAGACAATAACAN
rJMFF001O24+ CTAAAGCATTGACAGGCTGGACTGGTGTCCGGAANATAATGATGGACGAGACAATAACAN
____________________________________________________________
consensus CTAAAGCATTGACAGGCTGGACTGGTGTCCGGAAGATAATGATGGACGAGACAATAACAG

. : . : . : . : . : . :
rJMFF049G06+ AAATACGCTTCATGGTGTTTCCAATACTGAAAGTTAAAGGCGAGATCTCGTCCAGGGACA
rJMFF030P03+ AAATACGCTTCATGGNGTTTCCAATACTGAAAGTTAAAGGCGANATCTCGTCCAGGGACA
rJMFF029F20+ AAATACGCTTCATGGTGTTTCCAATACTGAAAGTTAAAGGCGANATCTCGTCCAGGGACA
rJMFF006P04+ AAATACGCTTCATGGTGTTTCCAATACTGAAAGTTAAAGGCAANATCTCGTCCAGGGACA
rJMFF010A02+ AAATACNCTTCATGGNGTTTCCAATACTGAAAGTTAAAGGCGANATCTCGTCCAGGGACA
rJMFF025G18+ AAATACGCTTCATGGNGTTTCCAATACTGAAAGTTAAAGGCGANATCTCGTCCAGGGACA
rJMFF030B03+ AAATACGCTTCATGGNGTTTCCAATACTGAAAGTTAAAGGCGANATCTCGTCCAGGGACA
rJMFF038G08+ AAATACNCTTCATGGTGTTTCCAATACTGAAAGTTAAAGGCGAGATCTCNTCCAGGGACA
rJMFF001O24+ AAATACGCTTCATGGTGTTTCCAATACTGAAAGTTAAAGGCGANATCTCGTCCAGGGACA
____________________________________________________________
consensus AAATACGCTTCATGGTGTTTCCAATACTGAAAGTTAAAGGCGAGATCTCGTCCAGGGACA

. : . : . : . : . : . :
rJMFF049G06+ TGTACGACACCTGATTGTAGAGGTGATAGAACACACTCTGGGCCAACATCCACCATATGA
rJMFF030P03+ TGTACNACACCTGATTGTA
rJMFF029F20+ TGTACNACACCTGATTGTANAGGTGATANAACACACTCTGGGCCAACATCCACCATATGA
rJMFF006P04+ TGTACNACACCTGATTGTANAGGTGATAAAACACACTCTGGGCCAACATCCACCATATGA
rJMFF010A02+ TGTACNACACCTGATTGTAAAGGNGATAAAACACACTCTGGGCCAACATCCACCATATGA
rJMFF025G18+ TGTACGACACCTGATTGTANAGGTGATAAAACACACTCTGGGCCAACATCCACCATATGA
rJMFF030B03+ TGTACGACACCTGATTGTA
rJMFF038G08+ TGTACGACACCTGATTGTAGAGGTGATANAACACACTCTGGGCCAACATCCACCATATGA
rJMFF001O24+ TGTACNACACCTGATTGTANAGGTGATANAACACACTCTGGGCCAACATCCACCATATGA
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consensus TGTACGACACCTGATTGTAGAGGTGATAAAACACACTCTGGGCCAACATCCACCATATGA

. : . : . : . : . : . :
rJMFF049G06+ TATTGGGTCCAATTTGGGAAAGAGCTTTCTCAAACCCAACAGTCCACATTTGTGGTCCCT
rJMFF029F20+ TATTGGGTCCAATTTGGGAAANAGCTTTCTCAAACCCAACAGTCCACATTTGNGGTCCCT
rJMFF006P04+ TATTGGGTCCAATTTGGGAAANAGCTTTCTCAAACCCAACAGTCCACATTTGTGGTCCCT
rJMFF010A02+ TATTGGGTCCAATTTGGGAAANAGCTTTCTCAAACCCAACAGTCCACATTTGTGGTCCCT
rJMFF025G18+ TATTGGGTCCAATTTGGGAAANAGCTTTCTCAAACCCAACAGTCCACATTTGTGGTCCCT
rJMFF038G08+ TATTGGGTCCAATTTGGGAAAGAGCTTTCTCAAACCCAACAGTCCACATTTGNGGTCCCT
rJMFF001O24+ TATTGGGTCCAATTTGGGAAAGAGCTTTCTCAAACCCAACAGTCCACATTTGTGGTCCCT
____________________________________________________________
consensus TATTGGGTCCAATTTGGGAAAGAGCTTTCTCAAACCCAACAGTCCACATTTGTGGTCCCT

. : . : . : . : . : . :
rJMFF049G06+ CCACAGCAATTGCAAATGGGG
rJMFF029F20+ CCACAGCAATTGCAAATGGGGTGAGAATAACAANAGATAGCATGGACAAGCAAGCGTAGT
rJMFF006P04+ CCACAGCAATTGCAAATGGGGTGANAATAACAAGAGATAGCATGGACAAGCAAGCGTAGT
rJMFF010A02+ CCACAGCAATTGCAAATGGGGNGANAATAACAAGAGATAGCATGGACAAGCAAGCGTAGT
rJMFF025G18+ CCACAGCAATTGCAAATGGGGTGAGAATAACAAGAGATAGCATGGACAAGCAAGCGTAGT
rJMFF038G08+ CCACAGCAATTGCAAATGGGGTGAGAATAACAAGAGATAGCATGGACAAGCAAGCGTAGT
rJMFF001O24+ CCACAGCAATTGCAAATGGGGTGAGAATAACAAGAGATAGCATGGACAAGCAAGCGTAGT
____________________________________________________________
consensus CCACAGCAATTGCAAATGGGGTGAGAATAACAAGAGATAGCATGGACAAGCAAGCGTAGT

. : . : . : . : . : . :
rJMFF029F20+ AGTTCATCCCACTAAC-CGACTTCCCCTTCATGCCCTTCTTGGAAAATATGTTACGGAAA
rJMFF006P04+ AGTTCATCCCACTAATACGACTTCCCCTTCATGCCCTTCTTGGAAAATATGTTACGGAAA
rJMFF010A02+ AGTTCATCCCACTAAC-CGACTTCCCCTTCATGCCCTTCTT
rJMFF025G18+ AGTTCATCCCACTAAC-CGACTTCCCCTTCATGCCCTTCTTGGAAAATATGTTACGGAAA
rJMFF038G08+ ANTTCATCCCACTAAC-CGACTTCCCCTTCATGCCCTTCTTGGAAAATATGTTACGGAAA
rJMFF001O24+ AGTTCATCCCACTAAC-CGACTTCCCCTTCATGCCCTTCTTGGAAAATATGTTACGGAAA
____________________________________________________________
consensus AGTTCATCCCACTAAC-CGACTTCCCCTTCATGCCCTTCTTGGAAAATATGTTACGGAAA

. : . : . : . : . : . :
rJMFF029F20+ ACAAACGCCAAGTTCGATATCATGGCAC
rJMFF006P04+ ACAAACGCCAAGTTCGATATCATGGCACCCATAAACCCAATCATGTTGAAGT
rJMFF025G18+ ACAAACGCCAAGTTCGATATCATGGCACCCATAAACCCAATCATGTTGAA
rJMFF038G08+ ACAAACGCCAAGTTCGATATCATGGCACCCATAAACC
rJMFF001O24+ ACAAACGCCAAGTTC
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consensus ACAAACGCCAAGTTCGATATCATGGCACCCATAAACCCAATCATGTTGAAGT