Alignment Contig 836

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF032I19+ GGTTCTCCGCGCACTTCCTTGCTCTTCTTCACACAAAAATCTGTACATGGCTCCTCTCTC
JMSF034M05+ GGTTCTCCGCGCACTTCCTTGCTCTTCTTCACACAAAAATCTGTACATGGCTCCTCTCTC
JMFS168A05+ CTCTTCTTCACACAAAAATCTGTACATGGCTCCTCTCTC
JMSF038I10+ GGTTCTCCGCGCACTTCCTTGCTCTTCTTCACACAAAAATCTGTACATGGCTCCTCTCTC
JMSF047D06+ GGTTCTCCGCGCACTTCCTTGCTCTTCTTCACACAAAAATCTGTACATGGCTCCTCTCTC
____________________________________________________________
consensus GGTTCTCCGCGCACTTCCTTGCTCTTCTTCACACAAAAATCTGTACATGGCTCCTCTCTC

. : . : . : . : . : . :
JMSF032I19+ GCCTCTCAAGGGTTTCGCCTCCCTTTTCTCTGCAAACTCCCATCCTCCGATCTCAAAACA
JMSF034M05+ GCCTCTCAAGGGTTTCGCCTCCCTTTTCTCTGCAAACTCCCATCCTCCGATCTCAAAACA
JMFS168A05+ GCCTCTCAAGGGTTTCGCCTCCCTTTTCTCTGCAAACTCCCATCCTCCGATCTCAAAACA
JMSF038I10+ GCCTCTCAAGGGTTTCGCCTCCCTTTTCTCTGCAAACTCCCATCCTCCGATCTCAAAACA
JMSF047D06+ GCCTCTCAAGGGTTTCGCCTCCCTTTTCTCTGCAAACTCCCATCCTCCGATCTCAAAACA
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consensus GCCTCTCAAGGGTTTCGCCTCCCTTTTCTCTGCAAACTCCCATCCTCCGATCTCAAAACA

. : . : . : . : . : . :
JMSF032I19+ TTGAAAATTCAATCATTCATTTCAATCCTCATAGGATTGCATCTACCTCTGCCGATTCAT
JMSF034M05+ TTGAAAATTCAATCATTCATTTCAATCCTCATAGGATTGCATCTACCTCTGCCGATTCAT
JMFS168A05+ TTGAAAATTCAATCATTCATTTCAATCCTCATAGGATTGCATCTACCTCTGCCGATTCAT
JMSF038I10+ TTGAAAATTCAATCATTCATTTCAATCCTCATAGGATTGCATCTACCTCTGCCGATTCAT
JMSF047D06+ TTGAAAATTCAATCATTCATTTCAATCCTCATAGGATTGCATCTACCTCTGCCGATTCAT
____________________________________________________________
consensus TTGAAAATTCAATCATTCATTTCAATCCTCATAGGATTGCATCTACCTCTGCCGATTCAT

. : . : . : . : . : . :
JMSF032I19+ CCAATTCGGAAAGATCCGTGCGAGGACTTTGGCCGGAGCTGCGCGTTGTTGTTTGTATTT
JMSF034M05+ CCAATTCGGAAAGATCCGTGCGAGGACTTTGGCCGGANCTGCGCGTTGTTGTTTGTATTT
JMFS168A05+ CCAATTCGGAAAGATCCGTGCGAGGACTTTGGCCGGAGCTGCGCGTTGTTGTTTGTATTT
JMSF038I10+ CCAATTCGGAAAGATCCGTGCGAGGACTTTGGCCGGAGCTGCGCGTTGTTGTTTGTATTT
JMSF047D06+ CCAATTCGGAAAGATCCGTGCGAGGACTTTGGCCGGAGCTGCGCGTTGTTGTTTGTATTT
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consensus CCAATTCGGAAAGATCCGTGCGAGGACTTTGGCCGGAGCTGCGCGTTGTTGTTTGTATTT

. : . : . : . : . : . :
JMSF032I19+ TAAGTTGCTATGGCGTGAGAGGTGGTGTTTCGCGTTGCTTGGATGATAGAGGGAGAGGTC
JMSF034M05+ TAAGTTGCTATGGCGNGAGAGGTGGTGTTTCGCGTTGCTTGGATGATAGAGGGAGAGGTC
JMFS168A05+ TAAGTTGCTATGGCGTGAGAGGTGGTGTTTCGCGTTGCTTGGATGATAGAGGGAGAGGTC
JMSF038I10+ TAAGTTGCTATGGCGTGAGAGGTGGTGTTTCGCGTTGCTTGGATGATAGAGGGAGAGGTC
JMSF047D06+ TAAGTTGCTATGGCGTGAGAGGTGGTGTTTCGCGTTGCTTGGATGATAGAGGGAGAGGTC
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consensus TAAGTTGCTATGGCGTGAGAGGTGGTGTTTCGCGTTGCTTGGATGATAGAGGGAGAGGTC

. : . : . : . : . : . :
JMSF032I19+ GAAGATCTGAGGATTTGGTTTGAGTTGATTCTGATTTGTGGAGGTCGCGATGGATGTGGA
JMSF034M05+ GAAGATCTGAGGATTTGGTTTGAGTTGATTCTGATTTGTGGAGGTCGCGATGGATGTGGA
JMFS168A05+ GAAGATCTGAGGATTTGGTTTGAGTTGATTCTGATTTGTGGAGGTCGCGATGGATGTGGA
JMSF038I10+ GAAGATCTGAGGATTTGGTTTGAGTTGATTCTGATTTGTGGAGGTCGCGATGGATGTGGA
JMSF047D06+ GAAGATCTGAGGATTTGGTTTGAGTTGATTCTGATTTGTGGAGGTCGCGATGGATGTGGA
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consensus GAAGATCTGAGGATTTGGTTTGAGTTGATTCTGATTTGTGGAGGTCGCGATGGATGTGGA

. : . : . : . : . : . :
JMSF032I19+ TTTCAACGGTGATGTGGCCAGCCTAGACACGGAGCTATTGCAGCTTCCGGACTTTTCTCC
JMSF034M05+ TTTCAACGGTGATGTGGCCAGCCTAGACACGGAGCTATTGCAGCTTCCGGACTTTTCTCC
JMFS168A05+ TTTCAACGGTGATGTGGCCAGCCTAGACACGGAGCTATTGCAGCTTCCGGACTTTTCTCC
JMSF038I10+ TTTCAACGGTGATGTGGCCAGCCTAGACACGGAGCTATTGCAGCTTCCGGACTTTTCTCC
JMSF047D06+ TTTCAACGGTGATGTGGCCAGCCTAGACACGGAGCTATTGCAGCTTCCGGACTTTTCTCC
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consensus TTTCAACGGTGATGTGGCCAGCCTAGACACGGAGCTATTGCAGCTTCCGGACTTTTCTCC

. : . : . : . : . : . :
JMSF032I19+ GTTGGCCATCAAAACGAAGGCGTATGTCGTTGAGAAGCTCTTTGATGAATGGCTCTCGAC
JMSF034M05+ GTTGGCCATC
JMFS168A05+ GTTGGCCATCAAAACGAAGGCGTATGTCGTTGAGAAGCTCTTTGATGAATGGCTCTCGAC
JMSF038I10+ GTTGGCCATCAAAACGAAGGCGTATGTCGTTGAGAAGCTCTTTGATGAATGGCTCTCGAC
JMSF047D06+ GTTGGCCATCAAAACGAAGGCGTATGTCGTTGAGAAGCTCTTTGATGAATGGCTCTCGAC
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consensus GTTGGCCATCAAAACGAAGGCGTATGTCGTTGAGAAGCTCTTTGATGAATGGCTCTCGAC

. : . : . : . : . : . :
JMSF032I19+ TCCTGATACGATTGTTTTGGTAAAAACTTTGGTCAGTAATGCCAAGGGTGCTTGTCCCTT
JMFS168A05+ TCCTGATACGATTGTTTTGGTAAAAACTTTGGTCAGTAATGCCAAGGGTGCTTGTCCCTT
JMSF038I10+ TCCTGATACGATTGTTTTGGTAAAAACTTTGGTCAGTAATGCCAAGGGTGCTTGTCCCTT
JMSF047D06+ TCCTGATACGATTGTTTTGGTAAAAACTTTGGTCAGTAATGCCAAGGGTGCTTGTCCCTT
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consensus TCCTGATACGATTGTTTTGGTAAAAACTTTGGTCAGTAATGCCAAGGGTGCTTGTCCCTT

. : . : . : . : . : . :
JMSF032I19+ AGGTGTCTCAGGAACTTCTTCAAGCAGTAGTGCTGCCACAAGCAATTCTTTGCCTTCTAT
JMFS168A05+ AGGTGTCTCAGGAACTTCTTCAAGCAGTAGTGCTGCCACAAGCAATTCTTTGCCTTCTAT
JMSF038I10+ AGGTGTCTCAGGAACTTCTTCAAGCAGTAGTGCTGCCACAAGCAATTCTTTGCCTTCTAT
JMSF047D06+ AGGTGTCTCAGGAACTTCTTCAAGCAGTAGTGCTGCCACAAGCAATTCTTTGCCTTCTAT
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consensus AGGTGTCTCAGGAACTTCTTCAAGCAGTAGTGCTGCCACAAGCAATTCTTTGCCTTCTAT

. : . : . : . : . : . :
JMSF032I19+ CTTTCCTGCTGGCAATGCACCTCCACTTTCACCACGAAGTTCTTCGGGTTCACCTAGAAC
JMFS168A05+ CTTTCCTGCTGGCAATGCACCTC
JMSF038I10+ CTTTCCTGCTGGCAATGCACCTCCACTTTCACCACGAAGTTCTTCGGGTTCACCTAGAAC
JMSF047D06+ CTTTCCTGCTGGCAATGCACCTCCACTTTCACCACGAAGTTCTTCGGGTTCACCTAGAAC
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consensus CTTTCCTGCTGGCAATGCACCTCCACTTTCACCACGAAGTTCTTCGGGTTCACCTAGAAC

. : . : . : . : . : . :
JMSF032I19+ CCTGAAG
JMSF038I10+ CCTGAAG
JMSF047D06+ CCTGAAGCA
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consensus CCTGAAGCA