Alignment Contig 8290

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF038J17+ TAGTACTGTAATAAAGATACTTATTTGTCTTTTTCATGATTGAATGGCAACACAAAAGTA
JMFN006L05- AAAGATACTTATTTGTCTTTTTCATGATTGAATGGCAACACAAAAGTA
rJMSF023F15+ ACACAAAAGTA
rJMSF028N21+ AGTA
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consensus TAGTACTGTAATAAAGATACTTATTTGTCTTTTTCATGATTGAATGGCAACACAAAAGTA

. : . : . : . : . : . :
rJMFF038J17+ CTTATATATTCATTCTCTTACAATTTATGAATAATTTCAGTGGAAAAAACAAATAATGGT
JMFN006L05- CTTATATATTCATTCTCTTACAATTTATGAATAATTTCAGTGGAAAAAACAAATAATGGT
rJMSF023F15+ CTTATATATTCATTCTCTTACAATTTATGAATAATTTCAGTGGAAAAAACAAATAATGGT
rJMSF028N21+ CTTATATATTCATTCTCTTACAATTTATGAATAATTTCAGTGGAAAAAACAAATAATGGT
rJMSF021E11+ AAAACAAATAATGGT
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consensus CTTATATATTCATTCTCTTACAATTTATGAATAATTTCAGTGGAAAAAACAAATAATGGT

. : . : . : . : . : . :
rJMFF038J17+ ACGGATAAACAGAAAAAGAATATCATCTTATATGTACATTTGTCTAATTCGAAAAGACGA
JMFN006L05- ACGGATAAACAGAAAAAGAATATCATCTTATATGTACATTTGTCTAATTCGAAAAGACGA
rJMSF023F15+ ACGGATAAACAGAAAAAGAATATCATCTTATATGTACATTTGTCTAATTCGAAAAGACGA
rJMSF028N21+ ACGGATAAACAGAAAAAGAATATCATCTTATATGTACATTTGTCTAATTCGAAAAGACGA
rJMSF021E11+ ACGGATAAACAGAAAAAGAATATCATCTTATATGTACATTTGTCTAATTCGAAAAGACGA
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consensus ACGGATAAACAGAAAAAGAATATCATCTTATATGTACATTTGTCTAATTCGAAAAGACGA

. : . : . : . : . : . :
rJMFF038J17+ TAGAACGTACCATCAATTTGTGTAATCACAAAGAGCTATCTGTAGCTGAGACTCGGGCAC
JMFN006L05- TAGAACGTACCATCAATTTGTGTAATCACAAAGAGCTATCTGTAGCTGAGACTCGGGCAC
rJMSF023F15+ TAGAACGTACCATCAATTTGTGTAATCACAAAGAGCTATCTGTAGCTGAGACTCGGGCAC
rJMSF028N21+ TAGAACGTACCATCAATTTGTGTAATCACAAAGAGCTATCTGTAGCTGAGACTCGGGCAC
rJMSF021E11+ TAGAACGTACCATCAATTTGTGTAATCACAAAGAGCTATCTGTAGCTGAGACTCGGGCAC
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consensus TAGAACGTACCATCAATTTGTGTAATCACAAAGAGCTATCTGTAGCTGAGACTCGGGCAC

. : . : . : . : . : . :
rJMFF038J17+ ATACTGCTTAATAAAAGCCCGTCTCCACCAGACTTGAAATGCTTTCTGAATGTTGGGGCA
JMFN006L05- ATACTGCTTAATAAAAGCCCGTCTCCACCAGACTTGAAATGCTTTCTGAATGTTGGGGCA
rJMSF023F15+ ATACTGCTTAATAAAAGCCCGTCTCCACCAGACTTGAAATGCTTTCTGAATGTTGGGGCA
rJMSF028N21+ ATACTGCTTAATAAAAGCCCGTCTCCACCAGACTTGAAATGCTTTCTGAATGTTGGGGCA
rJMSF021E11+ ATACTGCTTAATAAAAGCCCGTCTCCACCAGACTTGAAATGCTTTCTGAATGTTGGGGCA
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consensus ATACTGCTTAATAAAAGCCCGTCTCCACCAGACTTGAAATGCTTTCTGAATGTTGGGGCA

. : . : . : . : . : . :
rJMFF038J17+ ATCGTCGCCCTTATTAAGAAACCGGTCGAACCAATTAAGCATGATTGCTTGTTGTTGGGG
JMFN006L05- ATCGTCGCCCTTATTAAGAAACCGGTCGAACCAATTAAGCATGATTGCTTGTTGTTGGGA
rJMSF023F15+ ATCGTCGCCCTTATTAAGAAACCGGTCGAACCAATTAAGCATGATTGCTTGTTGTTGGGG
rJMSF028N21+ ATCGTCGCCCTTATTAAGAAACCGGTCGAACCAATTAAGCATGATTGCTTGTTGTTGGGG
rJMSF021E11+ ATCGTCGCCCTTATTAAGAAACCGGTCGAACCAATTAAGCATGATTGCTTGTTGTTGGGG
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consensus ATCGTCGCCCTTATTAAGAAACCGGTCGAACCAATTAAGCATGATTGCTTGTTGTTGGGG

. : . : . : . : . : . :
rJMFF038J17+ CAACGGAAGGGTAAGAATCGTTTGGCTCAATCCATCCTCGACTAGCGTCTTATCGATCGA
JMFN006L05- CAACGGAAGGGTAAGAATCGTTTGGCTCAATCCATCCTCGACTAGCGTCTTATCGATCGA
rJMSF023F15+ CAACGGAAGGGTAAGAATCGTTTGGCTCAATCCATCCTCGACTAGCGTCTTATCGATCGA
rJMSF028N21+ CAACGGAAGGGTAAGAATCGTTTGGCTCAATCCATCCTCGACTAGCGTCTTATCGATCGA
rJMSF021E11+ CAACGGAAGGGTAAGAATCGTTTGGCTCAATCCATCCTCGACTAGCGTCTTATCGATCGA
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consensus CAACGGAAGGGTAAGAATCGTTTGGCTCAATCCATCCTCGACTAGCGTCTTATCGATCGA

. : . : . : . : . : . :
rJMFF038J17+ TCTACACGCTCTCCTCATCCACCCGAAGTCCTCATAGAGTGCTTCCAGCCACGTCGATAA
JMFN006L05- TCTACACGCTCTCCTCATCCACCCGAAGTCCTCATAGAGTGCTTCCAGCCACGTCGATAA
rJMSF023F15+ TCTACACGCTCTCCTCATCCACCCGAAGTCCTCATAGAGTGCTTCCAGCCACGTCGATAA
rJMSF028N21+ TCTACACGCTCTCCTCATCCACCCGAAGTCCTCATAGAGTGCTTCCAGCCACGTCGATNA
rJMSF021E11+ TCTACACGCTCTCCTCATCCACCCGAAGTCCTCATAGAGTGCTTCCAGCCACGTCGATAA
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consensus TCTACACGCTCTCCTCATCCACCCGAAGTCCTCATAGAGTGCTTCCAGCCACGTCGATAA

. : . : . : . : . : . :
rJMFF038J17+ CAAAGAGAATCGTGCGTCTTTTGGCACCAATAAATGCCCTCGACCAATTGCCACACAGAG
JMFN006L05- CAAAGAGAATCGTGCGTCTTTTGGCACCAATAAATGCCCTCGACCAATTGCCACACAGAG
rJMSF023F15+ CAAAGAGAATCGTGCGTCTTTTGGCACCAATAAATGCCCTCGACCAATTGCCACACAGAG
rJMSF028N21+ CAAAGAGAATCGTGCGTCTTTTGGCACCAATAAATGCCCTCGACCAATTGCCACACAGAG
rJMSF021E11+ CAAAGAGAATCGTGCGTCTTTTGGCACCAATAAATGCCCTCGACCAATTGCCACACAGAG
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consensus CAAAGAGAATCGTGCGTCTTTTGGCACCAATAAATGCCCTCGACCAATTGCCACACAGAG

. : . : . : . : . : . :
rJMFF038J17+ CTGTGCCGTGATCCTGCTAATTTCGTGTCTATACATGGTGGGAATTTTGGAATGAAGACT
JMFN006L05- CTGT
rJMSF023F15+ CTGTGCCGTGATCCTGCTAATTTCGTGTCTATACATGGTGGGAATTTTGGAATGAAGACT
rJMSF028N21+ CTGTGCCGTGATCCTGCTAATTTCGTGTCTATACATGGTGGGAATTTTGGAATGAAGACT
rJMSF021E11+ CTGTGCCGTGATCCTGCTAATTTCGTGTCTATACATGGTGGGAATTTTGGAATGAAGACT
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consensus CTGTGCCGTGATCCTGCTAATTTCGTGTCTATACATGGTGGGAATTTTGGAATGAAGACT

. : . : . : . : . : . :
rJMFF038J17+ CGCAAGCTCCTTTTGGTCCGCCCATAAGTCCACAAATTCGTCCCCCATCTTCCTCTCAAT
rJMSF023F15+ CGCAAGCTCCTTTTGGTCCGCCCATAAGTCCACAAATTCGTCCCCCATCTTCCTCTCAAT
rJMSF028N21+ CGCAAGCTCCTTTTGGTCCGCCCATAAGTCCACAAATTCGTCCCCCATCTTCCTCTCAAT
rJMSF021E11+ CGCAAGCTCCTTTTGGTCCGCCCATAAGTCCACAAATTCGTCCCCCATCTTCCTCTCAAT
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consensus CGCAAGCTCCTTTTGGTCCGCCCATAAGTCCACAAATTCGTCCCCCATCTTCCTCTCAAT

. : . : . : . : . : . :
rJMFF038J17+ CAGGATATCAACGATCCACTGAACGTTATCCGCCTCGCGAGCTATCTCCCCCATCACGAC
rJMSF023F15+ CAGGATATCAACGATCCACTGAACGTTATCCGCCTCGCGAGCTATCTCCCCCATCACGAC
rJMSF028N21+ CAGGATATCAACGATCCACTGAACGTTATCCGCCTCGCGAGCTATCTCCCCCATCACGAC
rJMSF021E11+ CAGGATATCAACGATCCACTGAACGTTATCCGCCTCGCGAGCTATCTCCCCCATCACGAC
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consensus CAGGATATCAACGATCCACTGAACGTTATCCGCCTCGCGAGCTATCTCCCCCATCACGAC

. : . : . : . : . : . :
rJMFF038J17+ TCCCCGATCCTTCCCGCTTTCATCCACACACGTTGCCTCGGACGCACAGAGTAAT
rJMSF023F15+ TCCCCGATCCTTCCCGCTTTCATCCACACACGTTGCCTCGGACGCACAGAGTAATAACGA
rJMSF028N21+ TCCCCGATCCTTCCCGCTTTCATCCACACACGTTGCCTCG
rJMSF021E11+ TCCCCGATCCTTCCCGCTTTCATCCACACACGTTGCCTCGGACGCACAGAGTAATAACGA
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consensus TCCCCGATCCTTCCCGCTTTCATCCACACACGTTGCCTCGGACGCACAGAGTAATAACGA

. : . : . : . : . : . :
rJMSF023F15+ ATTAAGACACCCGTGACAAAGATTATAGAGCATGTCC
rJMSF021E11+ ATTAAGACACCCGTGACAAAGATTATAGAGCATGTCCCTCGAAATAGTATTGTCAGGGAC
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consensus ATTAAGACACCCGTGACAAAGATTATAGAGCATGTCCCTCGAAATAGTATTGTCAGGGAC

. : . : . : . : . : . :
rJMSF021E11+ GTCTTCTCTAAGCAACCGAGAA
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consensus GTCTTCTCTAAGCAACCGAGAA