Alignment Contig 8286

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF037O01+ TAATAATAATAATATATAAAAAGGGCTAAGAAGCTTCGGGAAAATGGACCCCAAGAAGAC
rJMFF022I10+ AATAATAATAATATATAAAAAGGGCTAAGAAGCTTCGGGAAAATGGACCCCAAGAAGAC
rJMFF020H14+ TATATAAAAAGGGCTAAGAAGCTTCGGGAAAATGGACCCCAAGAAGAC
rJMSF011F18+ AAATGGACCCCAAGGAGAC
____________________________________________________________
consensus TAATAATAATAATATATAAAAAGGGCTAAGAAGCTTCGGGAAAATGGACCCCAAGAAGAC

. : . : . : . : . : . :
rJMFF037O01+ AAAGGTTAGCCGAGACACGTGACTCATTGTCGCACGTGCCTCTCCTCGTAGTCGTACAGA
rJMFF022I10+ AAAGGTTAGCCGAGACACGTGACTCATTGTCGCACGTGCCTCTCCTCGTAGTCGTACAGA
rJMFF020H14+ AAAGGTTAGCCGAGACACGTGACTCATTGTCGCACGTGCCTCTCCTCGTAGTCGTACAGA
rJMSF011F18+ AAAGGTTAGCCGAGACACGTGACTCATTGTCGCACGTGCCTCTCCTCGTAGTCGTACAGA
____________________________________________________________
consensus AAAGGTTAGCCGAGACACGTGACTCATTGTCGCACGTGCCTCTCCTCGTAGTCGTACAGA

. : . : . : . : . : . :
rJMFF037O01+ GACCCTATCACGGATTCACACCTCTCCGCCATTCTCAGCTAATCTATCGATCTAATCATT
rJMFF022I10+ GACCCTATCACGGATTCACACCTCTCCGCCATTCTCAGCTAATCTATCGATCTAATCATT
rJMFF020H14+ GACCCTATCACGGATTCACACCTCTCCGCCACTCTCAGCTAATCTATCGATCTAATCATT
rJMSF011F18+ GACCCTATCACGGATTCACACCTCTCCGCCATTCTCAGCTAATCTATCGATCTAATCATT
JMFF033A24+ ATCGATCTAATCATT
____________________________________________________________
consensus GACCCTATCACGGATTCACACCTCTCCGCCATTCTCAGCTAATCTATCGATCTAATCATT

. : . : . : . : . : . :
rJMFF037O01+ CATCATCATCCTTCCCTTCCCTTTCAATTACAAACCCTTTGATTTTGCCTGTGGCACTGC
rJMFF022I10+ CATCATCATCCTTCCCTTCCCTTTCAATTACAAACCCTTTGATTTTGCCTGTGGCACTGC
rJMFF020H14+ CATCATCATCCTTCCCTTCCCTTTCAATTACAAACCCTTTGATTTTGCCTGTGGCACTGC
rJMSF011F18+ CATCATCATCCTTCCCTTCCCTTTCAATTACAAACCCTTTGATTTTGCCTGTGGCACTGC
JMFF033A24+ CATCATCATCCTTCCCTTCCCTTTCAATTACAAACCCTTTGATTTTGCCTGTGGCACTGC
____________________________________________________________
consensus CATCATCATCCTTCCCTTCCCTTTCAATTACAAACCCTTTGATTTTGCCTGTGGCACTGC

. : . : . : . : . : . :
rJMFF037O01+ CTAAGCCACGGCGACTCTTCGTTATCCTCGCCGTTTTCCGGCTCCGATTTCACGTCCGTC
rJMFF022I10+ CTAAGCCACGGCGACTCTTCGTTATCCTCGCCGTTTTCCGGCTCCGATTTCACGTCCGTC
rJMFF020H14+ CTAAGCCACGGCGACTCTTCGTTATCCTCGCCGTTTTCCGGCTCCGATTTCACGTCCGTC
rJMSF011F18+ CTAAGCCACGGCGACTCTTCGTTATCCTCGCCGTTTTCCGGCTCCGATTTCACGTCCGTC
JMFF033A24+ CTAAGCCACGGCGACTCTTCGTTATCCTCGCCGTTTTCCGGCTCCGATTTCACGTCCGTC
____________________________________________________________
consensus CTAAGCCACGGCGACTCTTCGTTATCCTCGCCGTTTTCCGGCTCCGATTTCACGTCCGTC

. : . : . : . : . : . :
rJMFF037O01+ CCCGGCTGCTGCAGCCGTAAATCGNGATCCTGCTCCGCCGATCCATCCTCGCCTTCACGC
rJMFF022I10+ CCCGGCTGCTGCAGCCGTAAATCGTGATCCTGCTCCGCCGATCCATCCTCGCCTTCACGC
rJMFF020H14+ CCCGGCTGCTGCAGCCGTAAATCGTGATCCTGCTCCGCCGATCCATCCTCGCCTTCACGC
rJMSF011F18+ CCCGGCTGCTGCAGCCGTAAATCGTGATCCTGCTCCGCCGATCCATCCTCGCCTTCACGC
JMFF033A24+ CCCGGCTGCTGCAGCCGTAAATCGTGATCCTGCTCCGCCGATCCATCCTCGCCTTCACGC
____________________________________________________________
consensus CCCGGCTGCTGCAGCCGTAAATCGTGATCCTGCTCCGCCGATCCATCCTCGCCTTCACGC

. : . : . : . : . : . :
rJMFF037O01+ ACCCGCTTTGACCCGATCGAGACTCCGAATAGTCTCGCTCGCATTTCGTCAGGCTCCGTT
rJMFF022I10+ ACCCGCTTTGACCCGATCGAGACTCCGAATAGTCTCGCTCGCATTTCGTCAGGCTCCGTT
rJMFF020H14+ ACCCGCTTTGACCCGATCGAGACTCCGAATAGTCTCGCTCGCATTTCGTCAGGCTCCGTT
rJMSF011F18+ ACCCGCTTTGACCCGATCGAGACTCCGAATAGTCTCGCTCGCATTTCGTCAGGCTCCGTT
JMFF033A24+ ACCCGCTTTGACCCGATCGAGACTCCGAATAGTCTCGCTCGCATTTCGTCAGGCTCCGTT
____________________________________________________________
consensus ACCCGCTTTGACCCGATCGAGACTCCGAATAGTCTCGCTCGCATTTCGTCAGGCTCCGTT

. : . : . : . : . : . :
rJMFF037O01+ TGGTTCTCTCCGCCGCAGCCGGCGGTGGCGGTGGCGGTGGCAGGCATGAGATCGAGCGGC
rJMFF022I10+ TGGTTCTCTCCGCCGCAGCCGGCGGTGGCGGTGGCGGTGGCAGGCATGAGATCGAGCGGC
rJMFF020H14+ TGGTTCTCTCCGCCGCAGCCGGCGGTGGCGGTGGCGGTGGCAGGCATGAGATCGAGCGGC
rJMSF011F18+ TGGTTCTCTCCGCCGCAGCCGGCGGTGGCGGTGGCGGTGGCAGGCATGAGATCGAGCGGC
JMFF033A24+ TGGTTCTCTCCGCCGCAGCCGGCGGTGGCGGTGGCGGTGGCAGGCATGAGATCGAGCGGC
____________________________________________________________
consensus TGGTTCTCTCCGCCGCAGCCGGCGGTGGCGGTGGCGGTGGCAGGCATGAGATCGAGCGGC

. : . : . : . : . : . :
rJMFF037O01+ TTTAGGGATTGCAAGCTGCTTTCCGCCGATTGATTGCTGGAGTTGGAGTTATTGCCGGAG
rJMFF022I10+ TTTAGGGATTGCAAGCTGCTTTCCGCCGATTGATTGCTGGAGTTGGAGTTATTGCCGGAG
rJMFF020H14+ TTTAGGGATTGCAAGCTGCTTTCCGCCGATTGATTGCTGGAGTTGGAGTTATTGCCGGAG
rJMSF011F18+ TTTAGGGATTGCAAGCTGCTTTCCGCCGATTGATTGCTGGAGTTGGAGTTATTGCCGGAG
JMFF033A24+ TTTAGGGATTGCAAGCTGCTTTCCGCCGATTGATTGCTGGAGTTGGAGTTATTGCCGGAG
____________________________________________________________
consensus TTTAGGGATTGCAAGCTGCTTTCCGCCGATTGATTGCTGGAGTTGGAGTTATTGCCGGAG

. : . : . : . : . : . :
rJMFF037O01+ TAATTTGACATTAATGCGTATATATTGTTGCATAGGCTTTTCATCTGGCTCAGCTCCTTG
rJMFF022I10+ TAATTTGACATTAATGCGTATATATTGTTGCATAGGCTTTTCATCTGGCTCAGCTCCTTG
rJMFF020H14+ TAATTTGACATTAATGCGTATATATTGTTGCATAGGCTTTTCATCTGGCTCAGCTCCTTG
rJMSF011F18+ TAATTTGACATTAATGCGTATATATTGTTGCATAGGCTTTTCATCTGGCTCAGCTCCTTG
JMFF033A24+ TAATTTGACATTAATGCGTATATATTGTTGCATAGGCTTTTCATCTGGCTCAGCTCCTTG
____________________________________________________________
consensus TAATTTGACATTAATGCGTATATATTGTTGCATAGGCTTTTCATCTGGCTCAGCTCCTTG

. : . : . : . : . : . :
rJMFF037O01+ ATTAGCTCTATGTTCTCCTTCCTCAGCCGCTCGTTCTCTCCGATCAGCTCCGATGTACTT
rJMFF022I10+ TTTAGCTCTATGTTCTCCTTCCTCAGCCGCTCGTTCTCTCCGATCAGCTCCGATGTACTT
rJMFF020H14+ TTTAGCTCTATGTTCTCCTTCCTCAGCCGCTCGTTCTCTCCGATCAGCTCCGATGTACTT
rJMSF011F18+ TTTAGCTCTATGTTCTCCTTCCTCAGCCGCTCGTTCTCTCCGATCAGCTCCGATGTACTT
JMFF033A24+ TTTAGCTCTATGTTCTCCTTCCTCAGCCGCTCGTTCTCTCCGATCAGCTCCGATGTACTT
____________________________________________________________
consensus TTTAGCTCTATGTTCTCCTTCCTCAGCCGCTCGTTCTCTCCGATCAGCTCCGATGTACTT

. : . : . : . : . : . :
rJMFF037O01+ CCTCCTTGCGATGCNTCTATCGCGGC
rJMFF022I10+ CCTCCTTGCGATGCATCTATCGCGGCTGTTCCGGGAGACGAGTTAGATGACACTACTTGC
rJMFF020H14+ CCTCCTTGCGATGCATCTATCGCGGCTGTTCCGGGAGACGAGTTAGATGACACTACTTGC
rJMSF011F18+ CCTCCTTGCGATGCATCTATCGCGGCTGTTCCGGGAGACGAGTTAGATGACACTACTTGC
JMFF033A24+ CCTCCTTGCGATGCATCTATCGCGGCTGTTCC
____________________________________________________________
consensus CCTCCTTGCGATGCATCTATCGCGGCTGTTCCGGGAGACGAGTTAGATGACACTACTTGC

. : . : . : . : . : . :
rJMFF022I10+ TCTTCGCCT
rJMFF020H14+ TCTTCGCCTGAATTCGAAG
rJMSF011F18+ TCTTCGCCTGAATTCGAAGGTGTAACCGTCTTCGATGGCTGTGCAGGAACGGCTGCTACA
____________________________________________________________
consensus TCTTCGCCTGAATTCGAAGGTGTAACCGTCTTCGATGGCTGTGCAGGAACGGCTGCTACA

. : . : . : . : . : . :
rJMSF011F18+ GCCGTAACCGTAACCGTAGCA
____________________________________________________________
consensus GCCGTAACCGTAACCGTAGCA