Alignment Contig 828

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF031M05+ GGAATTTAACAAAAATATAGTTCTTGATTATTTTGGGTAACTTATCTTATACACCACATC
JMSF032M05+ GGAATTTAACAAAAATATAGTTCTTGATTATTTTGGGTAACTTATCTTATACACCACATC
____________________________________________________________
consensus GGAATTTAACAAAAATATAGTTCTTGATTATTTTGGGTAACTTATCTTATACACCACATC

. : . : . : . : . : . :
JMSF031M05+ ATATTTGTTTAATTCTTTATTCTTCAAGCTAAAACGAACCATCAACCAAAAAACCATTCT
JMSF032M05+ ATATTTGTTTAATTCTTTATTCTTCAAGCTAAAACGAACCATCAACCAAAAAACCATTCT
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consensus ATATTTGTTTAATTCTTTATTCTTCAAGCTAAAACGAACCATCAACCAAAAAACCATTCT

. : . : . : . : . : . :
JMSF031M05+ TTTTTCAAAATTTTCAGTTTTCACCCTTGTTTCTTGGATTCTACTTCAGACCAAAACCAA
JMSF032M05+ TTTTTCAAAATTTTCAGTTTTCACCCTTGTTTCTTGGATTCTACTTCAGACCAAAACCAA
____________________________________________________________
consensus TTTTTCAAAATTTTCAGTTTTCACCCTTGTTTCTTGGATTCTACTTCAGACCAAAACCAA

. : . : . : . : . : . :
JMSF031M05+ ACCCCGATAGCCACCTCTCACCTGCAGGCTGGGCTGGAGCTCCGTCGCCTCCCCTGTTTT
JMSF032M05+ ACCCCGATAGCCACCTCTCACCTGCAGGCTGGGCTGGAGCTCCGTCGCCTCCCCTGTTTT
JMFF008H07+ CTGGAGCTCCGTCGCCTCCCCTGTTTT
____________________________________________________________
consensus ACCCCGATAGCCACCTCTCACCTGCAGGCTGGGCTGGAGCTCCGTCGCCTCCCCTGTTTT

. : . : . : . : . : . :
JMSF031M05+ GATCGATTAATAGGGGAGAGATGACGGAGATGAGAAGACAAACTTCGAGGAACAAAGGGT
JMSF034C23+ CAAACTTNGAGGAACAAAGGGN
JMSF032M05+ GATCGATTAATAGGGGAGAGATGACGGAGATGAGAAGACAAACTTCGAGGAACAAAGGGT
JMFF008H07+ GATCGATTAATAGGGGAGAGATGACGGAGATGAGAAGACAAACTTCGAGGAACAAAGGGT
JMSF028I05+ AAACTTCGAGGAACAAAGGGT
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consensus GATCGATTAATAGGGGAGAGATGACGGAGATGAGAAGACAAACTTCGAGGAACAAAGGGT

. : . : . : . : . : . :
JMSF031M05+ TTTATGTGAGGATGAAGTTGTTGAGACCAGGAAGACAGGCCTCTGAGAAGAGCTTCTGCC
JMSF034C23+ TTTATGTGAGGATGAAGTTGTTGAGACCAGGAAGACAGGCCTCTGAGAAGAGCTTCTGCC
JMSF032M05+ TTTATGTGAGGATGAAGTTGTTGAGACCAGGAAGACAGGCCTCTGAGAAGAGCTTCTGCC
JMFF008H07+ TTTATGTGAGGATGAAGTTGTTGAGACCAGGAAGACAGGCCTCTGAGAAGAGCTTCTGCC
JMSF028I05+ TTTATGTGAGGATGAAGTTGTTGAGACCAGGAAGACAGGCCTCTGAGAAGAGCTTCTGCC
____________________________________________________________
consensus TTTATGTGAGGATGAAGTTGTTGAGACCAGGAAGACAGGCCTCTGAGAAGAGCTTCTGCC

. : . : . : . : . : . :
JMSF031M05+ ATAGATATTTCAAATGGCTTCTCTGGTTTTCCCTTTCTTTCTATTTCTTCGCCTCTTTCA
JMSF034C23+ ATAGATATTTCAAATGGCTTCTCTGGTTTTCCNTTTCTTTCTATTTCTTCGCCTCTTTCA
JMSF032M05+ ATAGATATTTCAAATGGCTTCTCTGGTTTTCCCTTTCTTTCTATTTCTTCGCCTCTTTCA
JMFF008H07+ ATAGATATTTCAAATGGCTTCTCTGGTTTTCCCTTTCTTTCTATTTCTTCGCCTCTTTCA
JMSF028I05+ ATAGATATTTCAAATGGCTTCTCTGGTTTTCCCTTTCTTTCTATTTCTTCGCCTCTTTCA
____________________________________________________________
consensus ATAGATATTTCAAATGGCTTCTCTGGTTTTCCCTTTCTTTCTATTTCTTCGCCTCTTTCA

. : . : . : . : . : . :
JMSF031M05+ TTTTCACTCATAAACCTGCCACCTCCGCCATCATCTCCCGGACCACCGTCGTCCGCCAAT
JMSF034C23+ TTTTCACTCATAAACCTGCCACCTCNGCCATCATCTCCNGGACCACCGTCGNCCGCCAAT
JMSF032M05+ TTTTCACTCATAAACCTGCCACCTCCGCCATCATCTCCCGGACCACCGTCGTCCGCCAAT
JMFF008H07+ TTTTCACTCATAAACCTGCCACCTCCGCCATCATCTCCCGGACCACCGTCGTCCGCCAAT
JMSF028I05+ TTTTCACTCATAAACCTGCCACCTCCGCCATCATCTCCCGGACCACCGTCGTCCGCCAAT
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consensus TTTTCACTCATAAACCTGCCACCTCCGCCATCATCTCCCGGACCACCGTCGTCCGCCAAT

. : . : . : . : . : . :
JMSF031M05+ CTAAAGCTTCTCGCGCCCTCATCGAATCCCATAACTCTTCTCTTCTCCACCAGCCCAACA
JMSF034C23+ CTAAAGCTNCTCGCGCCCTCATCGAANCCCATAACTCTTCTCTTCTCCACNAGCCNAACA
JMSF032M05+ CTAAAGCTTCTCGCGCCCTCATCGAATCCCATAACTCTTCTCTTCTCCACCAGCCCAACA
JMFF008H07+ CTAAAGCTTCTCGCGCCCTCATCGAATCCCATAACTCTTCTCTTCTCCACCAGCCCAACA
JMSF028I05+ CTAAAGCTTCTCGCGCCCTCATCGAATCCCATAACTCTTCTCTTCTCCACCAGCCCAACA
____________________________________________________________
consensus CTAAAGCTTCTCGCGCCCTCATCGAATCCCATAACTCTTCTCTTCTCCACCAGCCCAACA

. : . : . : . : . : . :
JMSF031M05+ CCCACCAAGATGTGTTTAAGGATCTGAAGGTTTACATATACGATTTGCCGGCGAAATATA
JMSF034C23+ CCCACCNAGATGTGTTTAAGGATCNGAAGGTTTACATATAC
JMSF032M05+ CCCACCAAGATGTGTTTAAGGATCTGAAGGTTTACATATACGATTTGCCGGCGAAATATA
JMFF008H07+ CCCACCAAGATGTGTTTAAGGATCTGAAGGTTTACATATACGATTTGCCGGCGAAATATA
JMSF028I05+ CCCACCAAGATGTGTTTAAGGATCTGAAGGTTTACATATACGATTTGCCGGCGAAATATA
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consensus CCCACCAAGATGTGTTTAAGGATCTGAAGGTTTACATATACGATTTGCCGGCGAAATATA

. : . : . : . : . : . :
JMSF031M05+ ACGTTGATTGGTTGAATGAGCGGTGTAGCAGCCATTTGTTTGCTTCCGAGGTGGCTATAC
JMSF032M05+ ACGTTGATTGGTTGAATGAGCGGTGTAGCAGCCATTTGTTTGCTTCCGAGGTGGCTATAC
JMFF008H07+ ACGTTGATTGGTTGAATGAGCGGTGTAGCAGCCATTTGTTTGCTTCCGAGGTGGCTATAC
JMSF028I05+ ACGTTGATTGGTTGAATGAGCGGTGTAGCAGCCATTTGTTTGCTTCCGAGGTGGCTATAC
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consensus ACGTTGATTGGTTGAATGAGCGGTGTAGCAGCCATTTGTTTGCTTCCGAGGTGGCTATAC

. : . : . : . : . : . :
JMSF032M05+ ACAGAGCCTTGGCGAGC
JMFF008H07+ ACAGAGCCTTGGCGAGCAGCGAGGTTCGCACGTTTGACCCGTGGGAGGCTGACTTTTTCT
JMSF028I05+ ACAGAGCCTTGGCGAGCAGCGAGGTTCGCACGTTTGACCCGTGGGAGGCTGACTTTTTCT
____________________________________________________________
consensus ACAGAGCCTTGGCGAGCAGCGAGGTTCGCACGTTTGACCCGTGGGAGGCTGACTTTTTCT

. : . : . : . : . : . :
JMFF008H07+ TCGTCCCCGTTTACGTTTCTTGCAATTTCAGCACGGTCAATGGCTTCCCGGCGATTGGTC
JMSF028I05+ TCGTCCCCGTTTACGTTTCTTGCAATTTCAGCACGGTCAATGGCTTCCCGGCGATTGGTC
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consensus TCGTCCCCGTTTACGTTTCTTGCAATTTCAGCACGGTCAATGGCTTCCCGGCGATTGGTC

. : . : . : . : . : . :
JMFF008H07+ ACGCCCGG
JMSF028I05+ ACGCCCGGAATCTTATTTCCTCCGCCATTCGCCTCATTTCCTCTGACCTTCCCTTCTGGA
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consensus ACGCCCGGAATCTTATTTCCTCCGCCATTCGCCTCATTTCCTCTGACCTTCCCTTCTGGA

. : . : . : . : . : . :
JMSF028I05+ ACCGCAGCCGCGGCGCCGACCACGTCTTCGTCGCATCCCACGATTTTGGGTCATGTTTTC
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consensus ACCGCAGCCGCGGCGCCGACCACGTCTTCGTCGCATCCCACGATTTTGGGTCATGTTTTC

. : . : . : . : . : . :
JMSF028I05+ ACACATTGGAGGACACAGCAATCGCCGATGGAGTGCCGG
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consensus ACACATTGGAGGACACAGCAATCGCCGATGGAGTGCCGG