Alignment Contig 8261

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF032L23+ TTTGATTATCATTCCATTCCCATGTTCGAACGTAACCAAACACACCCTTGGAATACACAT
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consensus TTTGATTATCATTCCATTCCCATGTTCGAACGTAACCAAACACACCCTTGGAATACACAT

. : . : . : . : . : . :
rJMFF032L23+ AAATCAAGCATGGAATCTGGCATACCACTTGTTAGTGTGAGATTGAGTCTAATATACAAG
rJMFF020F16+ ATACCACTTGTTAGTGTGAGATTGAGTCTAATATACAAG
rJMFF003H14+ ATACCACTTGTTAGTGTGAGATTGAGTCTAATATACAAG
rJMFF025B08+ CCACTTGTTAGTGTGAGATTGAGTCTAATATACAAG
rJMFF038P16+ ATACCACTTGTTAGTGTGAGATTGAGTCTAATATACAAG
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consensus AAATCAAGCATGGAATCTGGCATACCACTTGTTAGTGTGAGATTGAGTCTAATATACAAG

. : . : . : . : . : . :
rJMFF032L23+ CTTCAATTATTCATATAATAGCTAAGGCAGATGAGAAAGTGAATTGGAAGCAAACAATTC
rJMFF020F16+ CTTCAATTATTCATATAATAGCTAAGGCAGATGAGAAAGTGAATTGGAAGCAAACAATTC
rJMFF003H14+ CTTCAATTATTCATATAATAGCTAAGGCAGATGAGAAAGTGAATTGGAAGCAAACAATTC
rJMFF025B08+ CTTCAATTATTCATATAATAGCTAAGGCAGATGAGAAAGTGAATTGGAAGCAAACAATTC
rJMFF038P16+ CTTCAATTATTCATATAATAGCTAAGGCAGATGAGAAAGTGAATTGGAAGCAAACAATTC
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consensus CTTCAATTATTCATATAATAGCTAAGGCAGATGAGAAAGTGAATTGGAAGCAAACAATTC

. : . : . : . : . : . :
rJMFF032L23+ AAGAATTGATCAAAATGGGAATGGCTTAATATCAGCTGAATTCATTTGCCATATCTTCAC
rJMFF020F16+ AAGAATTGATCAAAATGGGAATGGCTTAATATCAGCTGAATTCATTTGCCATATCTTCAC
rJMFF003H14+ AAGAATTGATCAAAATGGGAATGGCTTAATATCAGCTGAATTCATTTGCCATATCTTCAC
rJMFF025B08+ AAGAATTGATCAAAATGGGAATGGCTTAATATCAGCTGAATTCATTTGCCATATCTTCAC
rJMFF038P16+ AAGAATTGATCAAAATGGGAATGGCTTAATATCAGCTGAATTCATTTGCCATATCTTCAC
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consensus AAGAATTGATCAAAATGGGAATGGCTTAATATCAGCTGAATTCATTTGCCATATCTTCAC

. : . : . : . : . : . :
rJMFF032L23+ AGACGCTTTAACACTTGTCCCTGTGGCATTGTTGAACAAGAAGACTCTTGCCGCTTCATA
rJMFF020F16+ AGACGCTTTAACACTTGTCCCTGTGGCATTGTTGAACAAGAAGACTCTTGCCGCTTCATA
rJMFF003H14+ AGACGCTTTAACACTTGTCCCTGTGGCATTGTTGAACAAGAAGACTCTTGCCGCTTCATA
rJMFF025B08+ AGACGCTTTAACACTTGTCCCTGTGGCATTGTTGAACAAGAAGACTCTTGCCGCTTCATA
rJMFF038P16+ AGACGCTTTAACACTTGTCCCTGTGGCATTGTTGAACAAGAAGACTCTTGCCGCTTCATA
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consensus AGACGCTTTAACACTTGTCCCTGTGGCATTGTTGAACAAGAAGACTCTTGCCGCTTCATA

. : . : . : . : . : . :
rJMFF032L23+ TATTGCTTTGGTTGGATAT--TCTTGATGTTATAACTGTTCTTCCTCCTTGACCAAAACT
rJMFF020F16+ TATTGCTTTGGTTGGATATATTCTTGATGTTATAACTGTTCTTCCTCCTTGACCAAAACT
rJMFF003H14+ TATTGCTTTGGTTGGATATATTCTTGATGTTATAACTGTTCTTCCTCCTTGACCAAAACT
rJMFF025B08+ TATTGCTTTGGTTGGATATATTCTTGATGTTATAACTGTTCTTCCTCCTTGACCAAAACT
rJMFF038P16+ TATTGCTTTGGTTGGATATATTCTTGATGTTATAACTGTTCTTCCTCCTTGACCAAAACT
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consensus TATTGCTTTGGTTGGATATATTCTTGATGTTATAACTGTTCTTCCTCCTTGACCAAAACT

. : . : . : . : . : . :
rJMFF032L23+ CTCCACGATTGAATGGTCAACCAATATTCTTGCTGAATATTTTTCATCATCAATAACAGG
rJMFF020F16+ CTCCACGATTGAATGGTCAACCAATATTCTTGCTGAATATTTTTCATCATCAATAACAGG
rJMFF003H14+ CTCCACGATTGAATGGTCAACCAATATTCTTGCTGAATATTTTTCATCATCAATAACAGG
rJMFF025B08+ CTCCACGATTGAATGGTCAACCAATATTCTTGCTGAATATTTTTCATCATCAATAACAGG
rJMFF038P16+ CTCCACGATTGAATGGTCAACCAATATTCTTGCTGAATATTTTTCATCATCAATAACAGG
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consensus CTCCACGATTGAATGGTCAACCAATATTCTTGCTGAATATTTTTCATCATCAATAACAGG

. : . : . : . : . : . :
rJMFF032L23+ TACGGTGCTACCATAAACTTCTTTCGTAACTCCAGATGCTTCTGATGACCTTGTCAAGTC
rJMFF020F16+ TACGGTGCTACCATAAACTTCTTTCGTAACTCCAGATGCTTCTGATGACCTTGTCAAGTC
rJMFF003H14+ TACGGTGCTACCATAAACTTCTTTCGTAACTCCAGATGCTTCTGATGACCTTGTCAAGTC
rJMFF025B08+ TACGGTGCTACCATAAACTTCTTTCGTAACTCCAGATGCTTCTGATGACCTTGTCAAGTC
rJMFF038P16+ TACGGTGCTACCATAAACTTCTTTCGTAACTCCAGATGCTTCTGATGACCTTGTCAAGTC
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consensus TACGGTGCTACCATAAACTTCTTTCGTAACTCCAGATGCTTCTGATGACCTTGTCAAGTC

. : . : . : . : . : . :
rJMFF032L23+ AGTGCAGAAATGAGTCTCTACCTTCCCATCACCACCTTTTTGAACATAGAAGTAAACAGG
rJMFF020F16+ AGTGCAGAAATGAGTCTCTACCTTCCCATCACCACCTTTTTGAACATAGAAGTAAACAGG
rJMFF003H14+ AGTGCAGAAATGAGTCTCTACCTTCCCATCACCACCTTTTTGAACATAGAAGTAAACAGG
rJMFF025B08+ AGTGCAGAAATGAGTCTCTACCTTCCCATCACCACCTTTTTGAACATAGAAGTAAACAGG
rJMFF038P16+ AGTGCAGAAATGAGTCTCTACCTTCCCATCACCACCTTTTTGAACATAGAAGTAAACAGG
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consensus AGTGCAGAAATGAGTCTCTACCTTCCCATCACCACCTTTTTGAACATAGAAGTAAACAGG

. : . : . : . : . : . :
rJMFF032L23+ CGTTAGCTCGGCAAGTGTTTCATCAGCTGCAACTACCAAACCAAATGGCCCCAAAGCGCC
rJMFF020F16+ CGTTAGCTCGGCAAGTGTTTCATCAGCTGCAACTACCAAACCAAATGGCCCCAAAGCGCC
rJMFF003H14+ CGTTAGCTCGGCAAGTGTTTCATCAGCTGCAACTACCAAACCAAATGGCCCCAAAGCGCC
rJMFF025B08+ CGTTAGCTCGGCAAGTGTTTCATCAGCTGCAACTACCAAACCAAATGGCCCCAAAGCGCC
rJMFF038P16+ CGTTAGCTCGGCAAGTGTTTCATCAGCTGCAACTACCAAACCAAATGGCCCCAAAGCGCC
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consensus CGTTAGCTCGGCAAGTGTTTCATCAGCTGCAACTACCAAACCAAATGGCCCCAAAGCGCC

. : . : . : . : . : . :
rJMFF032L23+ TCTCTTAACAGCACCACCACTGCTACTGCAGTTGTACCTAAAATCGCCTTCACCTTCGAC
rJMFF020F16+ TCTCTTAACAGCACCACCACTGCTACTGCAGTTGTACCTAAAATCGCCTTCACCTTCGAC
rJMFF003H14+ TCTCTTAACAGCACCACCACTGCTACTGCAGTTGTACCTAAAATCGCCTTCACCTTCGAC
rJMFF025B08+ TCCCTTAACAGCACCACCACTGCTACTGCAGTTGTACCTAAAATCGCCTTCACCTTCGAC
rJMFF038P16+ TCTCTTAACAGCACCACCACTGCTACTGCAGTTGTACCTAAAATCGCCTTCACCTTCGAC
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consensus TCTCTTAACAGCACCACCACTGCTACTGCAGTTGTACCTAAAATCGCCTTCACCTTCGAC

. : . : . : . : . : . :
rJMFF032L23+ TGCCTCTTCATTCATCACTTCAAACGAGGCAATAATGTCTAACTGCGCAGCAGCTGG-AA
rJMFF020F16+ TGCCTCTTCATTCATCACTTCAAACGAGGCAATAATGTCTAACTGCGCAGCAGCTGG-AA
rJMFF003H14+ TGCCTCTTCATTCATCACTTCAAACGAGGCAATAATGTCTAACTGCGCAGCAGCTGG-AA
rJMFF025B08+ TGCCTCTTCATTCATCACTTCAAACGAGGCAATAATGTCTAACTGCGCAGCAGCTGGGAA
rJMFF038P16+ TGCCTCTTCATTCATCACTTCAAACGAGGCAATAATGTCTAACTGCGCAGCAGCTGG-AA
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consensus TGCCTCTTCATTCATCACTTCAAACGAGGCAATAATGTCTAACTGCGCAGCAGCTGG-AA

. : . : . : . : . : . :
rJMFF032L23+ TGTGGATTGGTAGGATTTCACCTGGTTGAAGATTGACCTTTGTGACAATGGGGTCGCCTG
rJMFF020F16+ TGTGGATTGGTAGGATTTCACCTGGTTGAAGATTGACCTTTGTGACAATGGGGTCGCCTG
rJMFF003H14+ TGTGGATTGGTAGGATTTCACCTGGTTGAAGATTGACCTTTGTGACAATGGGGTCGCCTG
rJMFF025B08+ TGTGGATTGGTANGATTTCACCTG
rJMFF038P16+ TGTGGATTGGTAGGATTTCACCTGGTTGAAGATTGACCTTTGTGACAATGGGGTCGCCTG
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consensus TGTGGATTGGTAGGATTTCACCTGGTTGAAGATTGACCTTTGTGACAATGGGGTCGCCTG

. : . : . : . : . : . :
rJMFF032L23+ ATCTCAACCTCTTTACTTCTTCA
rJMFF020F16+ ATCTCAACCTCTTTACTTCTTCAATTGG
rJMFF003H14+ ATCTCAACCTCTTTACTTCTTCAATTGGCCACTGAAGCAGAATGACTTCCTGTCTTCTTG
rJMFF038P16+ ATCTCAACCTCTTTACTTCTTCAATTGGCCACTGAAGCAGA-TGACTTCCTGTCTTCTTG
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consensus ATCTCAACCTCTTTACTTCTTCAATTGGCCACTGAAGCAGAATGACTTCCTGTCTTCTTG

. : . : . : . : . : . :
rJMFF003H14+ TCTAAATGCAGT
rJMFF038P16+ TCTAAATGCAGTG
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consensus TCTAAATGCAGTG