Alignment Contig 8243

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF027O13+ CTCTTTTTATTCCCTGGTTTGTTTCAGGGGAAAATAAGGCTCTTAAACAGTTAGTCAACT
rJMFF029J07+ TATTCCCTGGTTTGTTTCAGGGGAAAATAAGGCTCTTAAACAGTTAGTCAACT
rJMSF034L13+ TAAGGCTCTTAAACAGTTAGTCAACT
rJMSF028N15+ AAATAAGGCTCTTAAACAGTTAGTCAACT
rJMSF048M16+ ATAAGGCTCTTAAACAGTTAGTCAACT
rJMSF052C22+ AAGGCTCTTAAACAGTTAGTCNACT
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consensus CTCTTTTTATTCCCTGGTTTGTTTCAGGGGAAAATAAGGCTCTTAAACAGTTAGTCAACT

. : . : . : . : . : . :
rJMFF027O13+ GATTCAAAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
rJMFF029J07+ GATTCAAAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
rJMSF034L13+ GATTCAAAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
rJMSF028N15+ GATTCAAAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
rJMFF048E13+ TCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
rJMSF048M16+ GATTCAAAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
rJMSF052C22+ GATTCANAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA
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consensus GATTCAAAATGTTGTTCTGGAAAAGAATTTATATCATATGCTGAACCAATCATGGCAACA

. : . : . : . : . : . :
rJMFF027O13+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
rJMFF029J07+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
rJMSF034L13+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
rJMSF032O19+ ACCTCATGGAT
rJMFF043H19+ ACCTCATGGAT
rJMSF028N15+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
rJMFF047I19+ ACCTCATGGAT
rJMFF048E13+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
rJMSF048M16+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
rJMSF052C22+ AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT
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consensus AATACCTGTTCTCACAGTGACAATTGTGTTCAAACTGAATATCCAAACAACCTCATGGAT

. : . : . : . : . : . :
rJMFF027O13+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMFF029J07+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMSF034L13+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMSF032O19+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMFF043H19+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMSF028N15+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMFF047I19+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMFF048E13+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMSF048M16+ AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT
rJMSF052C22+ AANAATCGGGAGATATTTTTTCACTAACTGTANAGCCATATTGTGGTCCACCTTTACGGN
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consensus AAGAATCGGGAGATATTTTTTCACTAACTGTAGAGCCATATTGTGGTCCACCTTTACGGT

. : . : . : . : . : . :
rJMFF027O13+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMFF029J07+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMSF034L13+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMSF032O19+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMFF043H19+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMSF028N15+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMFF047I19+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMFF048E13+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMSF048M16+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
rJMSF052C22+ ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT
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consensus ATTGGATAAGATACTCAACTGGATATCCCTTCAGTTTGTGTGGGACAATTCCAAGATCTT

. : . : . : . : . : . :
rJMFF027O13+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAGTCACATCCA
rJMFF029J07+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMSF034L13+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMSF032O19+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMFF043H19+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMSF028N15+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMFF047I19+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATC
rJMFF048E13+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMSF048M16+ CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
rJMSF052C22+ CNAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA
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consensus CAAATGTTAAAGCATTTTCTGACACAAGTGTATCAGTGGTAAGGGCCTCAATCACATCCA

. : . : . : . : . : . :
rJMFF027O13+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMFF029J07+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMSF034L13+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMSF032O19+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMFF043H19+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMSF028N15+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMFF048E13+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMSF048M16+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
rJMSF052C22+ AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG
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consensus AATTAAATATTGATGGAGTTGGCAGTGGAAACGGAACTTTCTTGAGCAGTAGCTCTCGAG

. : . : . : . : . : . :
rJMFF027O13+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMFF029J07+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMSF034L13+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMSF032O19+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMFF043H19+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMSF028N15+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMFF048E13+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMSF048M16+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
rJMSF052C22+ GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA
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consensus GTGTTGCGATTGCCTTAGCAATTGGGAAAGGAACCTTCACATAGCGAGGCCATTCACGGA

. : . : . : . : . : . :
rJMFF027O13+ TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT
rJMFF029J07+ TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT
rJMSF034L13+ TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT
rJMSF032O19+ TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT
rJMFF043H19+ TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT
rJMSF028N15+ TCACGTCGTACATAAGCTCAGCCAATTGGTGAACTGTGAAAATCTCTGGTCCACCAAGTT
rJMFF048E13+ TCACGTCGTACATA
rJMSF048M16+ TCACGTCGTACATAAGCTCAGCCAATTGGTGAACTGTGAAAATCTCTGGTCCACCAAGTT
rJMSF052C22+ TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT
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consensus TCACGTCGTACATAAGCTCAGCCAATTGGTGCACTGTGAAAATCTCTGGTCCACCAAGTT

. : . : . : . : . : . :
rJMFF027O13+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMFF029J07+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMSF034L13+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMSF032O19+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMFF043H19+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMSF028N15+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMSF048M16+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
rJMSF052C22+ CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA
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consensus CATAAACTTTTCCCATGCTGGTACCGTCGTCTTTCAATGAAGCAATAATTGCAGAGGCAA

. : . : . : . : . : . :
rJMFF027O13+ CATCAGTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC
rJMFF029J07+ CATCAGTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC
rJMSF034L13+ CATCAGTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC
rJMSF032O19+ CATCAGTAACATATACTGG
rJMFF043H19+ CATCAGTAACATATACTGGTTGAATCTTTGT
rJMSF028N15+ CATCAGTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC
rJMSF048M16+ CATCAGTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC
rJMSF052C22+ CATCANTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC
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consensus CATCAGTAACATATACTGGTTGAATCTTTGTAGTACCACCTCCAATAAGTGGCAGGAAGC

. : . : . : . : . : . :
rJMFF027O13+ CATAATTTTTTGCAAATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA
rJMFF029J07+ CATAATTTTTTGCAAATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA
rJMSF034L13+ CATAATTTTTTGCAAATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA
rJMSF028N15+ CATAATTTTTTGCAAATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA
rJMSF048M16+ CATAATTTTTTGCAAATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA
rJMSF052C22+ CATAATTTTTTGCANATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA
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consensus CATAATTTTTTGCAAATTGTGCCCATGGGTTCAAAATTCTATCCTCAGTACCAATCATCA

. : . : . : . : . : . :
rJMFF027O13+ CAGCAGGNTTCAATATTG
rJMFF029J07+ CAGCAGGTTTCAATATTGTTGCCTCTGGAATTT
rJMSF034L13+ CAGCAGGTTTCA
rJMSF028N15+ CAGCAGGTTTCAATATTGTTGCCTCTGGAATTTCTCT
rJMSF048M16+ CAGCAGGTTTCAATATTGTTGCCTCTGGAATTT
rJMSF052C22+ CAGCAGGTTTCAATATTGTTGCCTCTGGAATTTCTCTTAAAACAGCCTCTTCNGCTGTAG
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consensus CAGCAGGTTTCAATATTGTTGCCTCTGGAATTTCTCTTAAAACAGCCTCTTCNGCTGTAG

. : . : . : . : . : . :
rJMSF052C22+ CTTTTGCTTTGCGCATTCT
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consensus CTTTTGCTTTGCGCATTCT