Alignment Contig 8180

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF012A20+ TCTTGATCATACATATAATTAGGGTGTTTAGTTTTGTAAAATTTGGAATGTGTAGATAAC
rJMFF050I01+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTT
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consensus TCTTGATCATACATATAATTAGGGTCCTTAGGGCGGAAAAACCTGGAAAGTGTAGATAAC

. : . : . : . : . : . :
rJMFF012A20+ AGGAAAGAAAGTAAACGATGCATCATTTTTATATTCTCAAAAATCAGAGTACACGAAAAT
rJMFF050I01+ TTTTTTGAAAGTAAACGATGCATCATTTTTATATTCTCAAAAATCAGAGTACACGAAAAT
JMSF029C13- GAAAGTAAACGATGCATCATTTTTATATTCTCAAAAATCAGAGTACACGAAAAT
rJMSF029C13+ GTACACGAAAAT
rJMFF039A14+ AAAATCAGAGTACACGAAAAT
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consensus AGGAAAGAAAGTAAACGATGCATCATTTTTATATTCTCAAAAATCAGAGTACACGAAAAT

. : . : . : . : . : . :
rJMFF012A20+ AAATACTGGCATG-TTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT
rJMFF050I01+ AAATACTGGCATG-TTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT
JMSF029C13- AAATACTGGCATG-TTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT
rJMSF029C13+ AAATACTGGCATGGTTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT
rJMFF039A14+ AAATACTGGCATG-TTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT
rJMSF035M21+ GTTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT
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consensus AAATACTGGCATG-TTTAGAACTAAGTACTTCATTCCCATCCATTTCCCTCCCCTCAGAT

. : . : . : . : . : . :
rJMFF012A20+ TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC
rJMFF050I01+ TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC
JMSF029C13- TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC
rJMSF029C13+ TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC
rJMFF039A14+ TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC
rJMSF035M21+ TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC
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consensus TCTCATTTGAAAAGGTTTCTCAGACCATCAAAAATTTTAAGCGCCCTTAGTTCACCACTC

. : . : . : . : . : . :
rJMFF012A20+ CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG
rJMFF050I01+ CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG
JMSF029C13- CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG
rJMSF029C13+ CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG
rJMFF039A14+ CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG
rJMSF035M21+ CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG
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consensus CTTATATCCCTCAATCTCCTCCTCAATATATATTGTGCCCGGAATAGTATTCTCCTTTCG

. : . : . : . : . : . :
rJMFF012A20+ CTTGTGCACAAATCCACGGCTAGCTGTTTCAGAAACACCCTTCTGTTAAGTTGCTTTGGA
rJMFF050I01+ CTTGTGCACAAATCCACGGCTAGCTGTTTCAGAAACACCCTTCTGTTAAGTTGCTTTGGA
JMSF029C13- CTTGTGCACAAATCCACGGCTAGCTGTTTCTGAAACACCCTTCTGTTAAGTTGCTTTGGA
rJMSF029C13+ CTTGTGCACAAATCCACGGCTAGCTGTTTCTGAAACACCCTTCTGTTAAGTTGCTTTGGA
rJMFF039A14+ CTTGTGCACAAATCCACGGCTAGCTGTTTCAGAAACACCCTTCTGTTAAGTTGCTTTGGA
rJMSF035M21+ CTCGTGCACAAATCCACGGCTAGCTGTTTCAGAAACACCCTTCTGTTAAGTTGCTTTGGA
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consensus CTTGTGCACAAATCCACGGCTAGCTGTTTCAGAAACACCCTTCTGTTAAGTTGCTTTGGA

. : . : . : . : . : . :
rJMFF012A20+ TTTGTTACATCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG
rJMFF050I01+ TTTGTTACATCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG
JMSF029C13- TTTGTTACATCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG
rJMSF029C13+ TTTGTTACATCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG
rJMFF039A14+ TTTGTTACATCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG
rJMSF035M21+ TTTGTTACACCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG
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consensus TTTGTTACATCGAGATCCATTTCCCCACTCGCCTGAAGGAATTTGGAGTACTTCGATATG

. : . : . : . : . : . :
rJMFF012A20+ CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG
rJMFF050I01+ CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG
JMSF029C13- CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG
rJMSF029C13+ CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG
rJMFF039A14+ CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG
rJMSF035M21+ CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG
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consensus CCAGACTCACAACTATCAAGAATATACTGCAATGCATCTTCCTCTATTTCAGGATACCTG

. : . : . : . : . : . :
rJMFF012A20+ ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA
rJMFF050I01+ ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA
JMSF029C13- ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA
rJMSF029C13+ ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA
rJMFF039A14+ ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA
rJMSF035M21+ ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA
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consensus ATATCCTTCTTGGATGATGTCCTATTTGATGCAGCAGCAGCCATCTCTTCAAATTGTCTA

. : . : . : . : . : . :
rJMFF012A20+ TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA
rJMFF050I01+ TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA
JMSF029C13- TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA
rJMSF029C13+ TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA
rJMFF039A14+ TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA
rJMSF035M21+ TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA
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consensus TTCATACTTGGGGGGCTGACTGCTAAATAAGCATATGCCATCAACTCCAATGGCCACCCA

. : . : . : . : . : . :
rJMFF012A20+ GTAATTTGTACAGGAAACCGTTCTGATGTAGATAATCCATGCTTTTTCAAAGCTTCCATC
rJMFF050I01+ GTAATTTGTACAGGAAACCGTTCTGATGTAGATAATCCATGCTTTTTCAAAGCTTCCATC
rJMFF039A14+ GTAATTTGTACAGGAAACCGTTCTGATGTAGATAATCCATGCTTTTTCAAAGCTTCCATC
rJMSF035M21+ GTAATTTGTACAGGAAACCGTTCTGATGTAGATAATCCATGCTTTTTCAAAGCTTCCATC
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consensus GTAATTTGTACAGGAAACCGTTCTGATGTAGATAATCCATGCTTTTTCAAAGCTTCCATC

. : . : . : . : . : . :
rJMFF012A20+ TTCTCCTTGTAACATTTGTCAGACTTCTTAATTGACACTGACACCTCAACTGAATCACTG
rJMFF050I01+ TTC
rJMFF039A14+ TTCTCCTTGTAACATTTGTCAGACTTCTTAATTGACACTGACACCTCAACTGAATCACTG
rJMSF035M21+ TTCTCCTTGTAACATTTGTCAGACTTCTTAATTGACACTGACACCTCAACTGAATCACTG
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consensus TTCTCCTTGTAACATTTGTCAGACTTCTTAATTGACACTGACACCTCAACTGAATCACTG

. : . : . : . : . : . :
rJMFF012A20+ GGATTTGTGCCTTCTCTGGGGGACAAATCCATATGAAAGCAACAGCTCTCCATTAGA
rJMFF039A14+ GGATTTGTGCCTTCTCTGGGG-ACNAATCCATATGAAAGCAACAGCTCTCCATTAGACTT
rJMSF035M21+ GGATTTGTGCCTTCTCTGGGG-ACAANTCCATATGAAAGCANCAGCTCTCCATTAGA
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consensus GGATTTGTGCCTTCTCTGGGG-ACAAATCCATATGAAAGCAACAGCTCTCCATTAGACTT

. : . : . : . : . : . :
rJMFF039A14+ CTTTCCATATGATA
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consensus CTTTCCATATGATA