Alignment Contig 8131

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF004N16+ TAGATAGATAATTAAGTTCATTCCGAACAAACACTAAAAGAAAAACAAACACAAAAGGCT
rJMFF021G19+ AGATAATTAAGTTCATTCCGAACAAACACTAAAAGAAAAACAAACACAAAAGGCT
rJMFF013H14+ ACTAAAAGAAAAACAAACACAAAAGGCT
rJMSF033N16+ AACACAAAAGGCT
____________________________________________________________
consensus TAGATAGATAATTAAGTTCATTCCGAACAAACACTAAAAGAAAAACAAACACAAAAGGCT

. : . : . : . : . : . :
rJMFF004N16+ ATGCAACGCCACCAGTTTGAAGTTTGATCCGGCCATGCAACATGATTCAAGTCTGCTGTC
rJMFF021G19+ ATGCAACGCCACCAGTTTGAAGTTTGATCCGGCCATGCAACATGATTCAAGTCTGCTGTC
rJMFF013H14+ ATGCAACGCCACCAGTTTGAAGTTTGATCCGGCCATGCAACATGATTCAAGTCTGCTGTC
rJMSF033N16+ ATGCAACGCCACCAGTTTGAAGTTTGATCCGGCCATGCAACATGATTCAAGTCTGCTGTC
JMFS003C02- CCAGTTTGAAGTTTGATCCGGCCATGCAACATGATTCAAGTCTGCTGTC
____________________________________________________________
consensus ATGCAACGCCACCAGTTTGAAGTTTGATCCGGCCATGCAACATGATTCAAGTCTGCTGTC

. : . : . : . : . : . :
rJMFF004N16+ TGCAGATGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA
rJMFF021G19+ TGCAGATGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA
rJMFF013H14+ TGCAGATGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA
rJMSF033N16+ TGCAGATGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA
JMFS003C02- TGCAGATGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA
rJMSF050F08+ TGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA
____________________________________________________________
consensus TGCAGATGCACTACGAAAACAAACACAAAAGGCTATGCTATAACAGTCTCACAGCCTCCA

. : . : . : . : . : . :
rJMFF004N16+ TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG
rJMFF021G19+ TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG
rJMFF013H14+ TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG
rJMSF033N16+ TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG
JMFS003C02- TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG
rJMSF050F08+ TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG
____________________________________________________________
consensus TAGGATACTAAAACTATATATACAATCCATAGTAGTCATCATTCCAACTTTGAAAAATCG

. : . : . : . : . : . :
rJMFF004N16+ GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT
rJMFF021G19+ GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT
rJMFF013H14+ GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT
rJMSF033N16+ GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT
JMFS003C02- GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT
rJMSF050F08+ GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT
____________________________________________________________
consensus GGACAGAACCCCGTCACGCTTCAGCAGAAAAACATTGAACTCGAGACCTTTTCTTCTAGT

. : . : . : . : . : . :
rJMFF004N16+ CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA
rJMFF021G19+ CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA
rJMFF013H14+ CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA
rJMSF033N16+ CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA
JMFS003C02- CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA
rJMSF050F08+ CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA
____________________________________________________________
consensus CGGGGCAACTGAGGAACTGGGGCTGGACCTGCGTTTGGTCCCCCACCACCATGGCTTGAA

. : . : . : . : . : . :
rJMFF004N16+ GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA
rJMFF021G19+ GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA
rJMFF013H14+ GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA
rJMSF033N16+ GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA
JMFS003C02- GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA
rJMSF050F08+ GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA
____________________________________________________________
consensus GATGTCTCGGACGTATCTTCAAATTTCATCCACTGTCCCAACTGGGTGGCAGCCAAATGA

. : . : . : . : . : . :
rJMFF004N16+ GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT
rJMFF021G19+ GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT
rJMFF013H14+ GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT
rJMSF033N16+ GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT
JMFS003C02- GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT
rJMSF050F08+ GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT
____________________________________________________________
consensus GCATAGCAAATAGGAGCAACAACAGATACAGCAGTGGTGCTCTTTTGGTACACATAGGAT

. : . : . : . : . : . :
rJMFF004N16+ AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA
rJMFF021G19+ AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA
rJMFF013H14+ AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA
rJMSF033N16+ AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA
JMFS003C02- AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA
rJMSF050F08+ AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA
____________________________________________________________
consensus AGGCTGTGCACAAGTTCTTGAAGTTCATCAGCTGAAAATCCAACCTCGTCATAAAGAACA

. : . : . : . : . : . :
rJMFF004N16+ TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAAGTAAAA-GTC
rJMFF021G19+ TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAAGTAAAAAGTC
rJMFF013H14+ TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAAGTAAAA-GTC
rJMSF033N16+ TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAAGTAAAA-GTC
JMFS003C02- TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAA
rJMSF050F08+ TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAAGTAAAA-GTC
____________________________________________________________
consensus TGGTAGTGTGTTGGTCTTGTGGTCCCAATCATTCCTGCATGAGCACACAAGTAAAA-GTC

. : . : . : . : . : . :
rJMFF004N16+ ATTGTTTTTC-GGATGACAAACTTTACTATCAATAATTGTCCCAGGNTGAACATTATCAG
rJMFF021G19+ ATTGTTTTTCCGGATGACAAACTTTACTATCAATAATTGTCC
rJMFF013H14+ ATTGTTTTTC-GGATGACAAACTTTACTATCAATAATTGTCCCAGGTTGAACATTATCAG
rJMSF033N16+ ATTGTTTTTC-GGATGACAAACTTTACTATCAATAATTGTCCCAGGTTGAACATTATCAG
rJMSF050F08+ ATTGTTTTTC-GGATGACAAACTTTACTATCAATAATTGTCCCAGGTTGAACATTATCAG
____________________________________________________________
consensus ATTGTTTTTC-GGATGACAAACTTTACTATCAATAATTGTCCCAGGTTGAACATTATCAG

. : . : . : . : . : . :
rJMFF004N16+ G
rJMFF013H14+ GAGAC
rJMSF033N16+ GAGACCCAGGTTGGAAGAACTTGGTGTGATGATTCTTCTGAGCAACAATGACCGTAAACT
rJMSF050F08+ GAGACCCAGGTTGGAAGAACTTGGTGTGATGATTCTTCTGAGCAACAATGACCGTAAACT
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consensus GAGACCCAGGTTGGAAGAACTTGGTGTGATGATTCTTCTGAGCAACAATGACCGTAAACT

. : . : . : . : . : . :
rJMSF033N16+ TGGGCGACCATTTCTCAT
rJMSF050F08+ TGGGCGACCATTTCTCATCAAGAAATTTACAAGCCTCAATGATCTGATCAAGTTCAATGT
____________________________________________________________
consensus TGGGCGACCATTTCTCATCAAGAAATTTACAAGCCTCAATGATCTGATCAAGTTCAATGT

. : . : . : . : . : . :
rJMSF050F08+ TAAGAACTTGATTGAATTGGGATTCACTGACACCATCCCTGAAGATTATAATTTGGTCAG
____________________________________________________________
consensus TAAGAACTTGATTGAATTGGGATTCACTGACACCATCCCTGAAGATTATAATTTGGTCAG

. : . : . : . : . : . :
rJMSF050F08+ GCTTCCTTTTCCCAGAACTAACATAAAAGTCTAGCAATAGCTCCCTCATAATTCCATCAT
____________________________________________________________
consensus GCTTCCTTTTCCCAGAACTAACATAAAAGTCTAGCAATAGCTCCCTCATAATTCCATCAT

. : . : . : . : . : . :
rJMSF050F08+ CT
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consensus CT