Alignment Contig 8020

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF041N24+ GATGGAGAGAGCGAGTTTCAGAACCAACGTCCTAACCAGACACCTCCTCAATCAACAAAA
____________________________________________________________
consensus GATGGAGAGAGCGAGTTTCAGAACCAACGTCCTAACCAGACACCTCCTCAATCAACAAAA

. : . : . : . : . : . :
JMSF041N24+ CCCAAATCTCGACGATGATGATGTCCTACTCCAATCCTCGCCGTGCATCAGCTACACGCC
____________________________________________________________
consensus CCCAAATCTCGACGATGATGATGTCCTACTCCAATCCTCGCCGTGCATCAGCTACACGCC

. : . : . : . : . : . :
JMSF041N24+ GGCGGAGGCATCCGAACCGGCGGCGCGTTTCGACGTGTTCGAGATGCGGAAGTTGATGGA
____________________________________________________________
consensus GGCGGAGGCATCCGAACCGGCGGCGCGTTTCGACGTGTTCGAGATGCGGAAGTTGATGGA

. : . : . : . : . : . :
JMSF041N24+ CGGACACAATTTGCAGGAGAGGGACTGGCTGTATGGGGTGATGATACAGAGCAAGGTGTT
____________________________________________________________
consensus CGGACACAATTTGCAGGAGAGGGACTGGCTGTATGGGGTGATGATACAGAGCAAGGTGTT

. : . : . : . : . : . :
JMSF041N24+ CAACCCTAGATCAATGGGCGGTAGAGTGCATGTCGGGGCGGATTATAACCAGGCAATGGA
____________________________________________________________
consensus CAACCCTAGATCAATGGGCGGTAGAGTGCATGTCGGGGCGGATTATAACCAGGCAATGGA

. : . : . : . : . : . :
JMSF041N24+ ACAGCAGAGGGAGATGACGATGAGGAGAATTGAGTACCTGTCGGATTGTGGGGTGTTTCG
____________________________________________________________
consensus ACAGCAGAGGGAGATGACGATGAGGAGAATTGAGTACCTGTCGGATTGTGGGGTGTTTCG

. : . : . : . : . : . :
JMSF041N24+ AGGATGGCTGACGGAGAATGATCAGGCGGAAGCTGAGTTGAGGAAGGTTGCTCTTTGTGA
____________________________________________________________
consensus AGGATGGCTGACGGAGAATGATCAGGCGGAAGCTGAGTTGAGGAAGGTTGCTCTTTGTGA

. : . : . : . : . : . :
JMSF041N24+ AGTTATTGCCATTTTTGACTTCTCATTGGCTATCAAGATTGGTGTTCAAGTCTTTCTCTG
JMFF051D15+ G
____________________________________________________________
consensus AGTTATTGCCATTTTTGACTTCTCATTGGCTATCAAGATTGGTGTTCAAGTCTTTCTCTG

. : . : . : . : . : . :
JMSF041N24+ CATAGAGACACAATAAATATCGTCCGTCTTTTTCTTGGATCGACATCCGCTGAAGCAAAC
JMFF051D15+ CATAGAGACACAATAAATATCGTCCGTCTTTTTCTTGGATCGACATCCGCTGAAGCAAAC
JMSF004L01+ ATCCGCTGAAGCAAAC
JMSF022M10+ ATCCGCTGAAGCAAAC
JMSF037J20+ TCCGCTGAAGCAAAC
____________________________________________________________
consensus CATAGAGACACAATAAATATCGTCCGTCTTTTTCTTGGATCGACATCCGCTGAAGCAAAC

. : . : . : . : . : . :
JMSF041N24+ GTTTGTTTAAAGCTTAATCAACTCTGGAGATTGGAGTCTTCATCGTTATCGTCCATGGAG
JMFF051D15+ GTTTGTTTAAAGCTTAATCAACTCTGGAGATTGGAGTCTTCATCGTTATCGTCCATGGAG
JMSF004L01+ GTTTGTTTAAAGCTTAATCAACTCTGGAGATTGGAGTCTTCATCGTTATCGTCCATGGAG
JMSF022M10+ GTTTGTTTAAAGCTTAATCAACTCTGGAGATTGGAGTCTTCATCGTTATCGTCCATGGAG
JMSF037J20+ GTTTGTTTAAAGCTTAATCAACTCTGGAGATTGGAGTCTTCATCGTTATCGTCCATGGAG
JMFS147H09+ GAGATTGGAGTCTTCATCGTTATCGTCCATGGAG
JMSF044A02+ ATCGTTATCGTCCATGGAG
____________________________________________________________
consensus GTTTGTTTAAAGCTTAATCAACTCTGGAGATTGGAGTCTTCATCGTTATCGTCCATGGAG

. : . : . : . : . : . :
JMSF041N24+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
JMFF051D15+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
JMSF004L01+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
JMSF022M10+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
JMSF037J20+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
JMFS147H09+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
JMSF044A02+ AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT
____________________________________________________________
consensus AAAGCCAATTTCAGAACCCATGTCCTTACCAGACACCTAATCCAAGAAAACCCATGTGTT

. : . : . : . : . : . :
JMSF041N24+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
JMFF051D15+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
JMSF004L01+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
JMSF022M10+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
JMSF037J20+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
JMFS147H09+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
JMSF044A02+ GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC
____________________________________________________________
consensus GACGATGATATCCTACTACAATCCTCGCCCTGCATCGGCTACACGCCGCCGGAGCTATCC

. : . : . : . : . : . :
JMSF041N24+ GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG
JMFF051D15+ GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG
JMSF004L01+ GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG
JMSF022M10+ GAACCGGCGGCGTCTTTCGACGTAGCTGAGATGCGGAAGTTGATGGACGGACACAACTTG
JMSF037J20+ GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG
JMFS147H09+ GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG
JMSF044A02+ GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG
____________________________________________________________
consensus GAACCGGCGGCGTCTTTCGACGTAGCCGAGATGCGGAAGTTGATGGACGGACACAACTTG

. : . : . : . : . : . :
JMSF041N24+ GANGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAAAGATC
JMFF051D15+ GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC
JMSF004L01+ GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC
JMSF022M10+ GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC
JMSF037J20+ GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC
JMFS147H09+ GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC
JMSF044A02+ GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC
____________________________________________________________
consensus GAGGAGAGGGACTGGCTCTATGGCCTCATGATACAGAGCAGGCTGTTCAACCCAA-GATC

. : . : . : . : . : . :
JMSF041N24+ AAGGGGTGGTNAAAGTGTATGTATGGNCCGGATTTTAACCAGTCGATGGANCCANCANAA
JMFF051D15+ AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG
JMSF004L01+ AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG
JMSF022M10+ AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG
JMSF037J20+ AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG
JMFS147H09+ AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG
JMSF044A02+ AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG
____________________________________________________________
consensus AAGGGGTGGT-AAAGTGTATGTATGG-CCGGATTTTAACCAGTCGATGGAGC-AGCAGAG

. : . : . : . : . : . :
JMSF041N24+ AGAGATCNCGATGAGGANAATCNCGTACCTCTCGGATTGCGGGNTTTNCCGGGGATGGCT
JMFF051D15+ AGAGATCACGATGAGGAGAATCGCGTACCTCTCGGATTGCGGGGTTTTCCGGGGATGGCT
JMSF004L01+ AGAGATCACGATGAGGAGAATCGCGTACCTCTCGGATT
JMSF022M10+ AGAGATCACGATGAGGAGAATCGCGTACCTCTCGGATTGCGGGGTTTTCCGGGGATGGCT
JMSF037J20+ AGAGATCACGATGAGGAGAATCGCGTACCTCT--GATTGCGGGGTTTTCCGGGGATGGCT
JMFS147H09+ AGAGATCACGATGAGGAGAATCGCGTACCTCTCGGATTGCGGGGTTTTCCGGGGATGGCT
JMSF044A02+ AGAGATCACGATGAGGAGAATCGCGTACCTCTCGGATTGCGGGGTTTTCCGGGGATGGCT
____________________________________________________________
consensus AGAGATCACGATGAGGAGAATCGCGTACCTCTCGGATTGCGGGGTTTTCCGGGGATGGCT

. : . : . : . : . : . :
JMSF041N24+ GACTGAAAAAGGACCGGAAGCTGACCTGAAGAANCTTGCTCTTTTGGA
JMFF051D15+ GACTGAGAAAGGACCGGAAGCTGAGCTGAGGAAGCTTGCTCTTTTGGAT
JMSF022M10+ GACTGAGAAAGGACCGGAAGCTGAGCTGAGGAAGCTTGCTCTTTTGGATGTTACTACCAT
JMSF037J20+ GACTGAGAAAGGACCGGAAGCTGAGCTGAGGAAGCTTGCTCTTTTGGATGTTACTACCAT
JMFS147H09+ GACTGAGAAAGGACCGGAAGCTGAGCTGAGGAAGCTTGCTCTTTTGGATGTTACTACCAT
JMSF044A02+ GACTGAGAAAGGACCGGAAGCTGAGCTGAGGAAGCTTGCTCTTTTGGATGTTACTACCAT
____________________________________________________________
consensus GACTGAGAAAGGACCGGAAGCTGAGCTGAGGAAGCTTGCTCTTTTGGATGTTACTACCAT

. : . : . : . : . : . :
JMSF022M10+ TTTTGACCATTCATTGTCTATCAAACTTGGCGTTCATTTCTTTCTCTGGGGAGGAGCAAT
JMSF037J20+ TTTTGACCATTCATTGTCTATCAAACTTGGCGTTCATTTCTTTCTCTGGGGAGGAGCAAT
JMFS147H09+ TTTTGACCATTCATTGTCTATCAAACTTGGCGTTCATTTCTTTCTCTGGGGAGGAGCAAT
JMSF044A02+ TTTTGACCATTCATTGTCTATCAAACTTGGCGTTCATTTCTTTCTCTGGGGAGGAGCAAT
____________________________________________________________
consensus TTTTGACCATTCATTGTCTATCAAACTTGGCGTTCATTTCTTTCTCTGGGGAGGAGCAAT

. : . : . : . : . : . :
JMSF022M10+ CCAATTTTTTGGTACTAAGCGCCACCACGATAAGTGGCTGA
JMSF037J20+ CCAATTTTTTGGTACTAAGCGCCACCACGATAAGTGGCTGAGGGATTCTGAAAATTATTT
JMFS147H09+ CCAATTTTTTGGTACTAAGCGCCACCACGATAAGTGGCTGAGGGATTCTGAAAATTATTT
JMSF044A02+ CCAATTTTTTGGTACTAAGCGCCACCACGATAAGTGGCTGAGGGATTCTGAAAATTATTT
____________________________________________________________
consensus CCAATTTTTTGGTACTAAGCGCCACCACGATAAGTGGCTGAGGGATTCTGAAAATTATTT

. : . : . : . : . : . :
JMSF037J20+ GGTTAAAGGTTGCTTTGCCATGACGGAGTTAGGGCATGGAAGTAATGTTCGAGGTATAGA
JMFS147H09+ GGTTAAAGGTTGCTTTGCCATGACGGAGTTAGGGCATGGAAGTAATGTTCGAGGTAT
JMSF044A02+ GGTTAAAGGTTGCTTTGCCATGACGGAGTTAGGGCATGGAAGTAATGTTCGAGGTATAGA
____________________________________________________________
consensus GGTTAAAGGTTGCTTTGCCATGACGGAGTTAGGGCATGGAAGTAATGTTCGAGGTATAGA

. : . : . : . : . : . :
JMSF037J20+ AACAGTTACNACTTATGATTCGAGTACTGGAGAGTTTGTCAT
JMSF044A02+ AACAGTTACAACTTATGATTCGAGTACTGGAGAGTTTGTCATTAACACTCCATGTGAGTC
____________________________________________________________
consensus AACAGTTACAACTTATGATTCGAGTACTGGAGAGTTTGTCATTAACACTCCATGTGAGTC

. : . : . : . : . : . :
JMSF044A02+ AGCTCAGAAGTATTCGATTGGTGGTGCAGCTAATCATGCAACGCATACAGTTGTTTTTTC
____________________________________________________________
consensus AGCTCAGAAGTATTCGATTGGTGGTGCAGCTAATCATGCAACGCATACAGTTGTTTTTTC

. : . : . : . : . : . :
JMSF044A02+ ACAACTCAACATTGATGGGAAAAATCAGGGGGTTCATGCATTTATCGCTCA
____________________________________________________________
consensus ACAACTCAACATTGATGGGAAAAATCAGGGGGTTCATGCATTTATCGCTCA