Alignment Contig 7817

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF014F13+ GAGAAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF032E02+ AAAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF007N06+ TACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF004G07+ AAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF027O02+ AAAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF047L13+ AAAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF047P23+ AAAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
JMSF046H11+ AAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT
____________________________________________________________
consensus GAAAAAGGCACAACCATAGTTTGAGTTACAAAAAAAAGCTTTGAGGTTTGAAAGAGAAAT

. : . : . : . : . : . :
JMSF014F13+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF032E02+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF007N06+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF004G07+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF027O02+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF047L13+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF047P23+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
JMSF046H11+ TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT
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consensus TCCTTACTTTAACGTTAACTTTGTTTCCAGTAAATTTAGACAGAATATGATATTAAACGT

. : . : . : . : . : . :
JMSF014F13+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF032E02+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF007N06+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF004G07+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF027O02+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF047L13+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF047P23+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
JMSF046H11+ GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA
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consensus GGCGTACGAGGTGGGAGGGATTCAAAGTCTTCGGACTTAAATTTCATTCAAAACTTCAGA

. : . : . : . : . : . :
JMSF014F13+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF032E02+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF007N06+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF004G07+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF027O02+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF047L13+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF047P23+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
JMSF046H11+ CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA
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consensus CTTGGAAGCCTTCCACTTCAGAAAATTCCAAACATCTCAATTCGAAAATTTGACACATCA

. : . : . : . : . : . :
JMSF014F13+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF032E02+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF007N06+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF004G07+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF027O02+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF047L13+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF047P23+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
JMSF046H11+ AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA
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consensus AATCATGGCAAAAACATTCAGGTTTGGTAAAACAAAATTAAAGACATTTTCTGAAAAAGA

. : . : . : . : . : . :
JMSF014F13+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF032E02+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF007N06+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF004G07+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF027O02+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF047L13+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF047P23+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
JMSF046H11+ CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA
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consensus CCATTTCAATACTTTTCTGAGAGAAAATCTCACAGAAGAGGAGCAATGTATTATCGACAA

. : . : . : . : . : . :
JMSF014F13+ TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA
JMSF032E02+ TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA
JMSF007N06+ TTTATGGAATTTGCCCAC
JMSF004G07+ TTTATGGAATTTGCCCACTC
JMSF027O02+ TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA
JMSF047L13+ TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA
JMSF047P23+ TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA
JMSF046H11+ TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA
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consensus TTTATGGAATTTGCCCACTCTTCCCCACGAAAAAGCTAAAAAAGCAGCAATCATTCATGA

. : . : . : . : . : . :
JMSF014F13+ TGTTGTAAAGAGCTTTTTTTTGGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC
JMSF032E02+ TGTTGTAAAGAGCTTTTTTT-GGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC
JMSF027O02+ TGTTGTAAAGAGCTTTTTTT-GGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC
JMSF047L13+ TGTTGTAAAGAGCTTTTTTT-GGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC
JMSF047P23+ TGTTGTAAAGAGCTTTTTTT-GGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC
JMSF046H11+ TGTTGTAAAGAGCTTTTTTT-GGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC
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consensus TGTTGTAAAGAGCTTTTTTT-GGGGGAAACCATTCACTTGTTATGTTCTGTATACGGGTC

. : . : . : . : . : . :
JMSF014F13+ CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTA
JMSF032E02+ CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTAGAAGAAATTAAAA
JMSF027O02+ CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTAGAAGAAATTAAAA
JMSF047L13+ CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTAGAAGAAATTAAAA
JMSF047P23+ CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTAGAAGAAATTAAAA
JMSF046H11+ CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTAGAAGAAATTAAAA
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consensus CTAAGGCCGGAGTATACTACACACGGGAAGAAATAATTCCTCTTCTAGAAGAAATTAAAA

. : . : . : . : . : . :
JMSF032E02+ CACTTCGAAATCCGAGATATGGACTACCCATATACAACGGATTCTATGAAATTGATGAGG
JMSF027O02+ CACTTCGAAATCCGAGATATGGACTACCCATATACAACGGATTCTATGAAATTGATGAGG
JMSF047L13+ CACTTCGAAATCCGAGATATGGACTACCCATATACAACGGATTCTATGAAATTGATGAGG
JMSF047P23+ CACTTCGAAATCCGAGATATGGACTACCCATATACAACGGATTCTATGAAATTGATGAGG
JMSF046H11+ CACTTCGAAATCCGAGATATGGACTACCCATATACAACGGATTCTATGAAATTGATGAGG
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consensus CACTTCGAAATCCGAGATATGGACTACCCATATACAACGGATTCTATGAAATTGATGAGG

. : . : . : . : . : . :
JMSF032E02+ CTATCAAATCCGCGGTTAAATACTTCGGAGATGATTTCATCATCTCTCCTTATGTGGTCC
JMSF027O02+ CTATCAAATCCGCGGTTAAATACTTCG
JMSF047L13+ CTATCAAATCCGCGGTTAAATACTTCGGAGATGATTTCATCATCTCTCCTTATGTGGT
JMSF047P23+ CTATCAAATCCGCGGTTAAATACTTCGGAGATGATTTCATCATCTCTCCNTATGTGGTCA
JMSF046H11+ CTATCAAATCCGCGGTTAAATACTTCGGAGATGATTTCATCATCTCTCCTTATGTGGTCA
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consensus CTATCAAATCCGCGGTTAAATACTTCGGAGATGATTTCATCATCTCTCCTTATGTGGTCA

. : . : . : . : . : . :
JMSF032E02+ AACATCANGAACTTTTTAAACAGTT
JMSF047P23+ AACATCANGAACTT
JMSF046H11+ AACATCAAGAACTTTTTAAACAGTTAAATTAAAAACAGACTAAGAATTTTTGAACAAAAT
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consensus AACATCAAGAACTTTTTAAACAGTTAAATTAAAAACAGACTAAGAATTTTTGAACAAAAT

. : . : . : . : . : . :
JMSF046H11+ TGAAAATTCATCCACTTCCTCTATTCAA
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consensus TGAAAATTCATCCACTTCCTCTATTCAA