Alignment Contig 7354

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF019K18+ ATAAAAAGTAAAAGAAAAAATGGAGTGTAATGGGGCGCACTGAACTCGGGGCGCTGGGGG
JMFF027K12+ GGGGCGCACTGAACTCGGGGCGCTGGGGG
JMSF038I22+ GGGGGCGCACTGAACTCGGGGCGCTGGGGG
JMSF011B10+ GCGCACTGAACTCGGGGCGCTGGGGG
JMSF037O17+ GGGGGCGCACTGAACTCGGGGCGCTGGGGG
JMFF044M24+ GGGGGCGCACTGAACTCGGGGCGCTGGGGG
JMSF024K02+ GCGCACTGAACTCGGGGCGCTGGGGG
JMFF042M02+ GGGGCGCACTGAACTCGGGGCGCTGGGGG
____________________________________________________________
consensus ATAAAAAGTAAAAGAAAAAATGGAGTGTAAGGGGGCGCACTGAACTCGGGGCGCTGGGGG

. : . : . : . : . : . :
JMFF019K18+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMFF027K12+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMSF038I22+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMSF011B10+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMSF037O17+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMFF044M24+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMSF024K02+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
JMFF042M02+ TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG
____________________________________________________________
consensus TTGCAGAACAAGAATCGCTGAGACCGATCGACCGACGCAACTTTCCGCCGCCCCACGTTG

. : . : . : . : . : . :
JMFF019K18+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMFF027K12+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMSF038I22+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMSF011B10+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMSF037O17+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMFF044M24+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMSF024K02+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
JMFF042M02+ ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG
____________________________________________________________
consensus ATACCCAGAATCCCAGAGCGGAAGAGCTACCCTTTGCCATCATCATCCGCCATGGATTTG

. : . : . : . : . : . :
JMFF019K18+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMFF027K12+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMSF038I22+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMSF011B10+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMSF037O17+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMFF044M24+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMSF024K02+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
JMFF042M02+ CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC
____________________________________________________________
consensus CGGATTCTACTCGCAAAGTCTCTAGCTTTCCCTCAACTCTGTGTCCTACAATGACGGAGC

. : . : . : . : . : . :
JMFF019K18+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
JMFF027K12+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
JMSF038I22+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
JMSF011B10+ TCATCTTCC
JMSF037O17+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
JMFF044M24+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
JMSF024K02+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
JMFF042M02+ TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC
____________________________________________________________
consensus TCATCTTCCCAATCGCCTTTCTTTCATGAAATATAGGGGTACACCGAATAGAGAGACCTC

. : . : . : . : . : . :
JMFF019K18+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
JMFF027K12+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
JMSF038I22+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
JMSF037O17+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
JMFF044M24+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
JMSF024K02+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
JMFF042M02+ GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC
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consensus GGTTCAAATGGGGGAGTTTGATGGTGGTGCGACGTACACTGTGATAGATGAAGTTCCATC

. : . : . : . : . : . :
JMFF019K18+ TTCTCCGAGGGCGAATAGTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
JMFF027K12+ TTCTCCGAGGGCGAATAGTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
JMSF038I22+ TTCTCCGAGGGCGAATANTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
JMSF037O17+ TTCTCCGAGGGCGAATAGTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
JMFF044M24+ TTCTCCGAGGGCGAATATTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
JMSF024K02+ TTCTCCGAGGGCGAATAGTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
JMFF042M02+ TTCTCCGAGGGCGAATAGTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT
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consensus TTCTCCGAGGGCGAATAGTGCCCGGAAAGTTTCAGTCTTGCCCCTCGTTTTTCTCATCTT

. : . : . : . : . : . :
JMFF019K18+ CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
JMFF027K12+ CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
JMSF038I22+ CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
JMSF037O17+ CTATGAAGTGTCGGGAGGGNCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
JMFF044M24+ CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
JMSF024K02+ CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
JMFF042M02+ CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT
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consensus CTATGAAGTGTCGGGAGGGCCGTTTGGTGTTGAGGATAGTGTTCATGCTGCTGGTCCCCT

. : . : . : . : . : . :
JMFF019K18+ TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT
JMFF027K12+ TCTTGCTCTTGTTGGAT
JMSF038I22+ TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT
JMSF037O17+ TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT
JMFF044M24+ TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT
JMSF024K02+ TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT
JMFF042M02+ TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT
____________________________________________________________
consensus TCTTGCTCTTGTTGGATTCTTGGTGTTCCCGTTTATATGGAGTGTTCCCGAGGCGCTGAT

. : . : . : . : . : . :
JMFF019K18+ AACTGCTGAGATGGGTACGATGTTTCCGGAAAACGG
JMSF038I22+ AACTGCTGAGATGGGTACGATGTTTCCGGAAAACGGTGGTTATGTGGTTTGGGTTTCTTC
JMSF037O17+ AACTGCTGAGATGGGTACGATGTTTC
JMFF044M24+ AACTGCTGAGATGGGTACGATGTTTCCGGAAAACGGTGGTTATGTGGTTTGGGTTTCTTC
JMSF024K02+ AACTGCTGAGATGGGTACGATGTTTCCGGAAAACGGTGGTTATGTGGTTTGGGTTTCTTC
JMFF042M02+ AACTGCTGAGATGGGTACGATGTTTCCGGAAAACGGTGGTTATGTGGTTTGGGTTTCTTC
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consensus AACTGCTGAGATGGGTACGATGTTTCCGGAAAACGGTGGTTATGTGGTTTGGGTTTCTTC

. : . : . : . : . : . :
JMSF038I22+ GGCTCTGGGCCCGTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTGAT
JMFF044M24+ GGCTCTGGGCCCGTATTGGGGGTTTCAGCAAGGTTGGATGANATGGCTAAGTGGGGTGAT
JMSF024K02+ GGCTCTGGGCCCGTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTGAT
JMFF042M02+ GGCTCTGGGCCCGTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTGAT
____________________________________________________________
consensus GGCTCTGGGCCCGTATTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTAAGTGGGGTGAT

. : . : . : . : . : . :
JMSF038I22+ TGATAATGCGCTCTATCCTGTTCTATTCCT
JMFF044M24+ TGATAATGCGCT
JMSF024K02+ TGATAATGCGCTCTATCCTGTTCTATTCCT
JMFF042M02+ TGATAATGCGCTCTATCCTGTTCTATTCCT
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consensus TGATAATGCGCTCTATCCTGTTCTATTCCT