Alignment Contig 7108

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF022A17+ AATTGGCAAGGAATCAAAACTCAAACATATCTGTCTCACACTTGTAGAATGCGTGCATGC
rJMSF017P09+ GTGCATGC
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consensus AATTGGCAAGGAATCAAAACTCAAACATATCTGTCTCACACTTGTAGAATGCGTGCATGC

. : . : . : . : . : . :
rJMSF022A17+ CATGTAAGAACAAGAGAGATAAAGACAACCTATGACACCATTTGCCATGGTAGACAATTT
rJMSF017P09+ CATGTAAGAACAAGAGAGATAAAGACAACCTATGACACCATTTGCCATGGTAGACAATTT
rJMFF044L18+ ACAACCTATGACACCATTTGCCATGGTAAACAATTT
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consensus CATGTAAGAACAAGAGAGATAAAGACAACCTATGACACCATTTGCCATGGTAGACAATTT

. : . : . : . : . : . :
rJMSF022A17+ CACAAAAACACTCACCCAAATACTAAAATAATTTGAAAAAAAAA--TACATATCACCATC
rJMSF017P09+ CACAAAAACACTCACCCAAATACTAAAATAATTTGAAAAAAAAAAATACATATCACCATC
rJMFF044L18+ CACAAAAACACTCCCCCAAATACTAAAATAATTTGAAAAAAAAAAATACATATCACCATC
rJMSF009L02+ ATATCACCATC
rJMSF024J12+ ATATCACCATC
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consensus CACAAAAACACTCACCCAAATACTAAAATAATTTGAAAAAAAAAAATACATATCACCATC

. : . : . : . : . : . :
rJMSF022A17+ ATCATGGCTTCAAAGCATGCATCACAACAACTATATATATATGTGGAAAGAAATATACAC
rJMSF017P09+ ATCANGGCTTCAAAGCANGCATCACAACAACTATATATATATGNGGAAAGAAATATACNC
rJMFF044L18+ ATCATGGCTTCAAAGCATGCATCACAA
rJMSF009L02+ ATCATGGCTTCAAAGCATGCATCACAACAACTATATATATATGTGGAAAGAAATATACAC
rJMSF024J12+ ATCATGGCTTCAAAGCATGCATCACAACAACTATATATATATGTGGAAAGAAATATACAC
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consensus ATCATGGCTTCAAAGCATGCATCACAACAACTATATATATATGTGGAAAGAAATATACAC

. : . : . : . : . : . :
rJMSF022A17+ ATATATAATATATATAAACATGTCATCCCCACACAAGGCAAGTTACTCGGCTCATCTGGC
rJMSF017P09+ ATATATAATATATATAAACATGTCATCCCCACNCAAGGCAAGTTACTCGGCTCATCTGGC
rJMSF009L02+ ATATATAATATATATAAACATGTCATCCCCACACAAGGCAAGTTACTCGGCTCATCTGGC
rJMSF024J12+ ATATATAATATATATAAACATGTCATCCCCACACAAGGCAAGTTACTCGGCTCATCTGGC
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consensus ATATATAATATATATAAACATGTCATCCCCACACAAGGCAAGTTACTCGGCTCATCTGGC

. : . : . : . : . : . :
rJMSF022A17+ GATATGAGACCTCGACAAAAAGGTTCTTTTTTCCCGACCATTCAGCTAAAAGACTGACTA
rJMSF017P09+ GATATGAGACCTCGACAAAAAGGTTCTTTTTTTCCGCCCATTCAGCTAAAAGACTGACTA
rJMSF009L02+ GATATGAGACCTCGACAAAAAGGTTCTTTTTTCCCGACCATTCAGCTAAAAGACTGACTA
rJMSF024J12+ GATATGAGACCTCGACAAAAAGGTTCTTTTTTCCCGACCATTCAGCTAAAAGACTGACTA
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consensus GATATGAGACCTCGACAAAAAGGTTCTTTTTTCCCGACCATTCAGCTAAAAGACTGACTA

. : . : . : . : . : . :
rJMSF022A17+ ATCATGTTCGTGTCAAGTAAGACCTGAAGCGCAGTTCTTTTGACCATTCAGCTAAAGACT
rJMSF017P09+ ATCATGTTCGNGTCAAGTAAGACCTGAAGCGCAGTTCTTTTGACCATTCAGCTAAAGACT
rJMSF009L02+ ATCATGTTCGTGTCAAGTAAGACCTGAAGCGCAGTTCTTTTGACCATTCAGCTAAAGACT
rJMSF024J12+ ATCATGTTCGTGTCAAGTAAGACCTGAAGCGCAGTTCTTTTGACCATTCAGCTAAAGACT
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consensus ATCATGTTCGTGTCAAGTAAGACCTGAAGCGCAGTTCTTTTGACCATTCAGCTAAAGACT

. : . : . : . : . : . :
rJMSF022A17+ AATCATGTTCAGGAGTAAGACCTCGAGCCCAGTTTTCTTGACCATTCAGCTAAGACTAAT
rJMSF017P09+ AATCATGTTCAGGAGTAAGACCTCGAGCCCAGTTTTCTTGACCATTCAGCTAANACTAAT
rJMSF009L02+ AATCATGTTCAGGAGTAAGACCTCGAGCCCAGTTTTCTTGACCATTCAGCTAAGACTAAT
rJMSF024J12+ AATCATGTTCAGGAGTAANACCTCGAGCCCAGTTTTCTTGACCATTCAGCTAANACTAAT
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consensus AATCATGTTCAGGAGTAAGACCTCGAGCCCAGTTTTCTTGACCATTCAGCTAAGACTAAT

. : . : . : . : . : . :
rJMSF022A17+ CATGTTCGTGTCAGGTAAGACCTGTTGGAAAGGAGTGGTCCCGGGGTGATGAAGGCGGGG
rJMSF017P09+ CATGTTCGTGTCAGGTAANACCTGTTGGAAAGGAGTGGTCCCGGGGTGATGAAGGCGGGG
rJMSF009L02+ CATGTTCGTGTCAGGTAAGACCTGTTGGAAAGGAGTGGTCCCGGGGTGATGAAGGCGGGG
rJMSF024J12+ CATGTTCGTGTCAGGTAANACCTGTTGGAAAGGAGTGGTCCCGGGGTGATGAAGGCGGGG
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consensus CATGTTCGTGTCAGGTAAGACCTGTTGGAAAGGAGTGGTCCCGGGGTGATGAAGGCGGGG

. : . : . : . : . : . :
rJMSF022A17+ GGCGGGGAATACCTGATGTAACGCGAAAGTGCAGCAATAGTTGCAGATTGTTGTTGCTGT
rJMSF017P09+ GGCGGGGAATACCTGATGTAACGCGAAAGTGCAGCAATAGTTGCAGATTGTTGTTGCTGT
rJMSF009L02+ GGCGGGGAATACCTGATGTAACGCGAAAGTGCAGCAATAGTTGCAGATTGTTGTTGCTGT
rJMSF024J12+ GGCGGGGAATACCTGATGTAACGCGAAAGTGCAGCAATAGTTGCANATTGTTGTTGCTGT
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consensus GGCGGGGAATACCTGATGTAACGCGAAAGTGCAGCAATAGTTGCAGATTGTTGTTGCTGT

. : . : . : . : . : . :
rJMSF022A17+ GATTTACTGGTGGGATAAGATTGGGGAATCCCCACAATATGTAATGTGACAGTATCTAAA
rJMSF017P09+ GATTTACTGGTGGGATAAGATTGGGGAATCCCCACAATATGTAATGTGACAGTATCTAAA
rJMSF009L02+ GATTTACTGGTGGGATAAGATTGGGGAATCCCCACAATATGTAATGTGACAGTATCTAAA
rJMSF024J12+ GATTTACTGGTGGGATAANATTGGGGAATCCCCACAATATGTAATGTGACAGTATCTAAA
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consensus GATTTACTGGTGGGATAAGATTGGGGAATCCCCACAATATGTAATGTGACAGTATCTAAA

. : . : . : . : . : . :
rJMSF022A17+ AAAAGGGGGTGGAAAGTGAGGTTTGGGACCCAAATTCCCCATCAGGCGTGCATTCCTCCC
rJMSF017P09+ AAAAGGGGGTGGAAAGTGAGGTTTGGGACCCAAATTCCCCATCANGCGTGCATTCCTCCC
rJMSF009L02+ AAAAGGGGGTGGAAAGTGAGGTTTGGGACCCAAATTCCCCATCAAGCGTGCATTCCTCCC
rJMSF024J12+ AAAAGGGGGTGGAAAGTGAGGTTTGGGACCCAAATTCCCCATCAAGCGTGCATTCCTCCC
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consensus AAAAGGGGGTGGAAAGTGAGGTTTGGGACCCAAATTCCCCATCAAGCGTGCATTCCTCCC

. : . : . : . : . : . :
rJMSF022A17+ TTTCCAGGGTCCCATGGGGGATCAACACACAATCATCCATTCC
rJMSF017P09+ TTTCCAGGGTCCCATGGGGGATCAACACACAATCATCCNTTCC
rJMSF009L02+ TTTCCAGGGTCCCATGGGGGATCAACACACAATCATCCATTCCCAGAAAACAACTCAACT
rJMSF024J12+ TTTCCAGGGTCCCATGGGGGATCAACACACAATCATCCATTCCCAGAAAACAACTCAACT
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consensus TTTCCAGGGTCCCATGGGGGATCAACACACAATCATCCATTCCCAGAAAACAACTCAACT

. : . : . : . : . : . :
rJMSF009L02+ CTCAAAGCAAGCCGGCGTGTTCTTTTCCTCTCTTAGGCGTCAAGATATTACCTCATCATA
rJMSF024J12+ CTCAAAGCAAGCCGGCGTGTTCTTTTCCTCTCTTAGGCGTCAAGATATTACCTCATCATA
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consensus CTCAAAGCAAGCCGGCGTGTTCTTTTCCTCTCTTAGGCGTCAAGATATTACCTCATCATA

. : . : . : . : . : . :
rJMSF009L02+ TCATGACTCTTANCCCCCGGATTTCTAAACCAGAACTGCTCATTCCTCCCTTC
rJMSF024J12+ TCATGACTCTTAGCCCCCGGATTTCTAAACCAGAACTGCTCATTCCTC
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consensus TCATGACTCTTAGCCCCCGGATTTCTAAACCAGAACTGCTCATTCCTCCCTTC