Alignment Contig 7003

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF051B04+ GGCCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCCAAACACCTAATACTATAAGTTT
rJMFF010O05+ CAAACACCTAATACTATAAGTTT
rJMSF053G03+ CCTAATACTATAAGTTT
____________________________________________________________
consensus GGCCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCCAAACACCTAATACTATAAGTTT

. : . : . : . : . : . :
rJMFF051B04+ AATCAACATCAGAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA
rJMFF010O05+ AATCAACATCAGAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA
rJMSF053G03+ AATCAACATCAGAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA
rJMFF019G08+ TCAACATCAGAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA
rJMSF006J21+ ACATCANAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA
rJMFF022I09+ ACATCAGAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA
____________________________________________________________
consensus AATCAACATCAGAAGTACAGCCCTGCTGCTGCAAAGCAAGAAGCAGGATAAAGGTCGAAA

. : . : . : . : . : . :
rJMFF051B04+ TTAAGGATTAACACACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA
rJMFF010O05+ TTAAGGATTAACACACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA
rJMSF053G03+ TTAAGGATTAACACACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA
rJMFF019G08+ TTAAGGATTAACACACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA
rJMSF006J21+ TTAAGGATTAACACACAGATAAAGCTACCATTTANATTANTGATTACATATCACTTTANA
rJMFF022I09+ TTAAGGATTAACACACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA
rJMFF017J04+ ACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA
rJMFF030L01+ TACCATTTAGATTAGTGATTACATATCACTTTAGA
____________________________________________________________
consensus TTAAGGATTAACACACAGATAAAGCTACCATTTAGATTAGTGATTACATATCACTTTAGA

. : . : . : . : . : . :
rJMFF051B04+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
rJMFF010O05+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
rJMSF053G03+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
rJMFF019G08+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
rJMSF006J21+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTANTCATT
rJMFF022I09+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
rJMFF017J04+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
rJMFF030L01+ GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT
____________________________________________________________
consensus GAAATTCAGATTGAGTCATGATTATCAGTTGTCACCATATTTCTTGAGCCAGTAGTCATT

. : . : . : . : . : . :
rJMFF051B04+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMFF010O05+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMSF053G03+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMFF019G08+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMSF006J21+ ACTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMFF022I09+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMFF017J04+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
rJMFF030L01+ AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT
____________________________________________________________
consensus AGTTATATCAGTAGTAAGCTTGCTGGTAAGCCGGTGCCATTGCATTGCCATAGCTTCCAT

. : . : . : . : . : . :
rJMFF051B04+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
rJMFF010O05+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
rJMSF053G03+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
rJMFF019G08+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
rJMSF006J21+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
rJMFF022I09+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
rJMFF017J04+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
JMFN001B07- CTTCGGGCGAGTAAACATACTGGGGAC
rJMFF030L01+ ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC
____________________________________________________________
consensus ATGGGGAGTAGGGGCTGCCCGGGTAAGGAGCGGCTTCGGGCGAGTAAACATACTGGGGAC

. : . : . : . : . : . :
rJMFF051B04+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
rJMFF010O05+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
rJMSF053G03+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
rJMFF019G08+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
rJMSF006J21+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTNAGCTGGGAGTCCAGTAGG
rJMFF022I09+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
rJMFF017J04+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
JMFN001B07- TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
rJMFF030L01+ TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT
____________________________________________________________
consensus TCATGCTTCCATGGGTGTATATTGGCGATGCAGGGTAAGCTGGGAGTCCAGTAGGGTACT

. : . : . : . : . : . :
rJMFF051B04+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
rJMFF010O05+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
rJMSF053G03+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
rJMFF019G08+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
rJMFF022I09+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
rJMFF017J04+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
JMFN001B07- GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
rJMFF030L01+ GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG
____________________________________________________________
consensus GGGTGTGCGAGGGCGACCTCACAAACGTAGGGGCGGCTGCTGGGAAAGAAGAGACGTAGG

. : . : . : . : . : . :
rJMFF051B04+ CGTTGGTTGAGCGGCCTGCCTTGGCG
rJMFF010O05+ CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
rJMSF053G03+ CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
rJMFF019G08+ CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
rJMFF022I09+ CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
rJMFF017J04+ CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
JMFN001B07- CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
rJMFF030L01+ CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC
____________________________________________________________
consensus CGTTGGTTGAGCGGCCTGCCTTGGCGGGAGGCATGGGACCACCGTTACTGACACGTGTAC

. : . : . : . : . : . :
rJMFF010O05+ GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
rJMSF053G03+ GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
rJMFF019G08+ GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
rJMFF022I09+ GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
rJMFF017J04+ GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
JMFN001B07- GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
rJMFF030L01+ GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA
____________________________________________________________
consensus GCTTCGCAGCCGGGGCGGCAGCAGCAGCCGGCTTCTTTTTCTCGCTCTTGGTCTTCTCCA

. : . : . : . : . : . :
rJMFF010O05+ ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
rJMSF053G03+ ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
rJMFF019G08+ ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
rJMFF022I09+ ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
rJMFF017J04+ ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
JMFN001B07- ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
rJMFF030L01+ ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT
____________________________________________________________
consensus ACTGGTCGAGACGCTTCTTGAGGTGCTCTGGCGGGAATTCAGCTTCGAGCTTGTATTCTT

. : . : . : . : . : . :
rJMFF010O05+ CAATGCACTTTANGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
rJMSF053G03+ CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
rJMFF019G08+ CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
rJMFF022I09+ CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
rJMFF017J04+ CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
JMFN001B07- CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
rJMFF030L01+ CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG
____________________________________________________________
consensus CAATGCACTTTAGGACAGCCCGGATTGCTGAGAGCTCCTTCTTCGCAGCAAGATGCGCAG

. : . : . : . : . : . :
rJMFF010O05+ CTCGGCC
rJMSF053G03+ CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA
rJMFF019G08+ CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA
rJMFF022I09+ CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA
rJMFF017J04+ CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA
JMFN001B07- CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA
rJMFF030L01+ CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA
____________________________________________________________
consensus CTCGGCCAGAATTGTTAGGATCCTCTAGAATTGCAGTAGCAGCCTTCTTCGCATCCTTCA

. : . : . : . : . : . :
rJMSF053G03+ GAAAAGCTTTCAGAAGAGGAACGGGAGGAAATTTGTTAATGAGGCCGACTTCATAAGTGA
rJMFF019G08+ GAAAAGCTTTCAGAAG
rJMFF022I09+ GAAAAGCTTTCAGAAGANGAACGGGAGGAAATTTGTTAATGAGGCC
rJMFF017J04+ GAAAAGCTTTCAGAAGAGGAACGGGAGGAAATTTGTTAATGAGGCCGACTTCATAAGTGA
JMFN001B07- GAAAAGCTTTCAGAAGAGGAACGGGAGGAAATTTGTTAATGAGGCCGACTTCATAAGTGA
rJMFF030L01+ GAAAAGCTTTCAGAAGAGGAACGGGAGGAAATTTGTTAATGAGGNCGACTTCATAAGTGA
____________________________________________________________
consensus GAAAAGCTTTCAGAAGAGGAACGGGAGGAAATTTGTTAATGAGGCCGACTTCATAAGTGA

. : . : . : . : . : . :
rJMSF053G03+ AATGTACAGCATCTACTTGTTGTCCTCTGCTAATTAACTCTTCAATCAGCTCANGCATTT
rJMFF017J04+ AATGTACAGCATCTACTTGTTGTCCTCTGCTAATTAACTCTTCAATCAGCTCAGGCATTT
JMFN001B07- AATGTACAGCATCTACTTGTTGTCCTCTGCTAATTAACTCTTCAATCAG
rJMFF030L01+ AATGTACAGCATCTACTTGTTGTCCTCTGCTAA
____________________________________________________________
consensus AATGTACAGCATCTACTTGTTGTCCTCTGCTAATTAACTCTTCAATCAGCTCAGGCATTT

. : . : . : . : . : . :
rJMSF053G03+ TATCTCCAAGGCCGAGAGACAGTGCAAGCTTANGCATATGTTTCCGCC
rJMFF017J04+ TATCTCCA
____________________________________________________________
consensus TATCTCCAAGGCCGAGAGACAGTGCAAGCTTANGCATATGTTTCCGCC