Alignment Contig 6990

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF048P10+ AATTTGTAATTTTATGATTATTAAATTAATGGTCTGATTAATTTGGCTGGGGTTGCCTCT
rJMFF018H13+ AATTTGTAATTTTATGATTATTAAATTAATGGTCTGATTAATTTGGCTGGGGTTGCCTCT
rJMFF031F22+ TGATTATTAAATTAATGGTCTGATTAATTTGGCTGGGGTTGCCTCT
rJMFF033M24+ TGATTATTAAATTAATGGTCTGATTAATTTGGCTGGGGTTGCCTCT
rJMSF021F22+ ATGGTCTGATTAATTTGGCTGGGGTTGCCTCT
____________________________________________________________
consensus AATTTGTAATTTTATGATTATTAAATTAATGGTCTGATTAATTTGGCTGGGGTTGCCTCT

. : . : . : . : . : . :
rJMFF048P10+ CTAACCAAATTAATTATGCGTCTGTATATACATTGATGAACACAAATGGTGGTGTGTAAC
rJMFF018H13+ CTAACCAAATTAATTATGCGTCTGTATATACATTGATGAACACAAATGGTGGTGTGTAAC
rJMFF031F22+ CTAACCAAATTAATTATGCGTCTGTATATACATTGATGAACACAAATGGTGGTGTGTAAC
rJMFF033M24+ CTAACCAAATTAATTATGCGTCTGTATATACATTGATGAACACAAATGGTGGTGTGTAAC
rJMSF021F22+ CTAACCAAATTAATTATGCGTCTGTATATACATTGATGAACACAAATGGTGGTGTGTAAC
____________________________________________________________
consensus CTAACCAAATTAATTATGCGTCTGTATATACATTGATGAACACAAATGGTGGTGTGTAAC

. : . : . : . : . : . :
rJMFF048P10+ TATGGAGGAAGAAGTGTCTTCTTGCTTCTTCAAAAAATGGAACAACATGGTAGTACAATG
rJMFF018H13+ TATGGAGGAAGAAGTGTCTTCTTGCTTCTTCAAAAAATGGAACAACATGGTAGTACAATG
rJMFF031F22+ TATGGAGGAAGAAGTGTCTTCTTGCTTCTTCAAAAAATGGAACAACATGGTAGTACAATG
rJMFF033M24+ TATGGAGGAAGAAGTGTCTTCTTGCTTCTTCAAAAAATGGAACAACATGGTAGTACAATG
rJMSF021F22+ TATGGAGGAAGAAGTGTCTTCTTGCTTCTTCAAAAAATGGAACAACATGGTAGTACAATG
____________________________________________________________
consensus TATGGAGGAAGAAGTGTCTTCTTGCTTCTTCAAAAAATGGAACAACATGGTAGTACAATG

. : . : . : . : . : . :
rJMFF048P10+ TAAAATTTACTGAAAATTGTTGGGTTATGTCAGGGGGTGACTGTCCCTTTCCTTCCTAGG
rJMFF018H13+ TAAAATTTACTGAAAATTGTTGGGTTATGTCAGGGGGTGACTGTCCCTTTCCTTCCTAGG
rJMFF031F22+ TAAAATTTACTGAAAATTGTTGGGTTATGTCAGGGGGTGACTGTCCCTTTCCTTCCTAGG
rJMFF033M24+ TAAAATTTACTGAAAATTGTTGGGTTATGTCAGGGGGTGACTGTCCCTTTCCTTCCTAGG
rJMSF021F22+ TAAAATTTACTGAAAATTGTTGGGTTATGTCAGGGGGTGACTGTCCCTTTCCTTCCTAGG
____________________________________________________________
consensus TAAAATTTACTGAAAATTGTTGGGTTATGTCAGGGGGTGACTGTCCCTTTCCTTCCTAGG

. : . : . : . : . : . :
rJMFF048P10+ TTGATCCATCAACTGCAGACAACCTCAACCGCCACTTTCTTCATCACATTCGGACATGGA
rJMFF018H13+ TTGATCCATCAACTGCAGACAACCTCAACCGCCACTTTCTTCATCACATTCGGACATGGA
rJMFF031F22+ TTGATCCATCAACTGCAGACAACCTCAACCGCCACTTTCTTCATCACATTCGGACATGGA
rJMFF033M24+ TTGATCCATCAACTGCAGACAACCTCAACCGCCACTTTCTTCATCACATTCGGACATGGA
rJMSF021F22+ TTGATCCATCAACTGCAGACAACCTCAACCGCCACTTTCTTCATCACATTCGGACATGGA
____________________________________________________________
consensus TTGATCCATCAACTGCAGACAACCTCAACCGCCACTTTCTTCATCACATTCGGACATGGA

. : . : . : . : . : . :
rJMFF048P10+ TCCCCTCCAAATGCTTCTGGTGTTACAGGCACCGTGCATGAATTCCACCCCACACAATAC
rJMFF018H13+ TCCCCTCCAAATGCTTCTGGTGTTACAGGCACCGTGCATGAATTCCACCCCACACAATAC
rJMFF031F22+ TCCCCTCCAAATGCTTCTGGTGTTACAGGCACCGTGCATGAATTCCACCCCACACAATAC
rJMFF033M24+ TCCCCTCCAAATGCTTCTGGTGTTACAGGCACCGTGCATGAATTCCACCCCACACAATAC
rJMSF021F22+ TCCCCTCCAAATGCTTCTGGTGTTACAGGCACCGTGCATGAATTCCACCCCACACAATAC
____________________________________________________________
consensus TCCCCTCCAAATGCTTCTGGTGTTACAGGCACCGTGCATGAATTCCACCCCACACAATAC

. : . : . : . : . : . :
rJMFF048P10+ TTTTCGAAAATGTCGAATGAGTGGAAGGCATGGC
rJMFF018H13+ TTTTCGAAAATGTCGAATGAGTGGAAGGCATGGCAGCTTCCTTGTTGGAAGTCGCCGCAT
rJMFF031F22+ TTTTCGAAAATGTCGAATGAGTGGAAGGCATGGCAGCTTCCTTGTTGGAAGTCGCCGCAT
rJMFF033M24+ TTTTCGAAAATGTCGAATGAGTGGAAGGCATGGCAGCTTCCTTGTTGGAAGTCGCCGCAT
rJMSF021F22+ TTTTCGAAAATGTCGAATGAGTGGAAGGCATGGCAGCTTCCTTGTTGGAAGTCGCCGCAT
____________________________________________________________
consensus TTTTCGAAAATGTCGAATGAGTGGAAGGCATGGCAGCTTCCTTGTTGGAAGTCGCCGCAT

. : . : . : . : . : . :
rJMFF018H13+ ATACCTTCTGGGGTTCCAAAGCTTGCAAATTTGATGGCAGTGATATTCTTTCCGCCATGG
rJMFF031F22+ ATACCTTCTGGGGTTCCAAAGCTTGCAAATTTGATGGCAGTGATATTCTTTCCGCCATGG
rJMFF033M24+ ATACCTTCTGGGGTTCCAAAGCTTGCAAATTTGATGGCAGTGATATTCTTTCCGCCATGG
rJMSF021F22+ ATACCTTCTGGGGTTCCAAAGCTTGCAAATTTGATGGCAGTGATATTCTTTCCGCCATGG
____________________________________________________________
consensus ATACCTTCTGGGGTTCCAAAGCTTGCAAATTTGATGGCAGTGATATTCTTTCCGCCATGG

. : . : . : . : . : . :
rJMFF018H13+ CCGCAGGACAGGTGGACTTTGGGTCTCAGCGCTCTTTCTGCTTTGCCAGAAGCTTGCATC
rJMFF031F22+ CCGCAGGACAGGTGGACTTTGGGTCTCAGCGCTCTTTCTGCTTTGCCAGAAGCTTGCATC
rJMFF033M24+ CCGCAGGACAGGTGGACTTTGGGTCTCAGCGCTCTTTCTGCTTTGCCAGAAGCTTGCATC
rJMSF021F22+ CCGCAGGACAGGTGGACTTTGGGTCTCAGCGCTCTTTCTGCTTTGCCAGAAGCTTGCATC
____________________________________________________________
consensus CCGCAGGACAGGTGGACTTTGGGTCTCAGCGCTCTTTCTGCTTTGCCAGAAGCTTGCATC

. : . : . : . : . : . :
rJMFF018H13+ TCCCAGTTCATCAACTGGGGCTGCCATTCAAACATCTGTGCACACACACTCGCTATTTCT
rJMFF031F22+ TCCCAGTTCATCAACTGGGGCTGCCATTCAAACATCTGTGCACACACACTCGCTATTTCT
rJMFF033M24+ TCCCAGTTCATCAACTGGGGCTGCCATTCAAACATCTGTGCACACACACTCGCTATTTCT
rJMSF021F22+ TCCCAGTTCATCAACTGGGGCTGCCATTCAAACATCTGTGCACACACACTCGCTATTTCT
____________________________________________________________
consensus TCCCAGTTCATCAACTGGGGCTGCCATTCAAACATCTGTGCACACACACTCGCTATTTCT

. : . : . : . : . : . :
rJMFF018H13+ CGTTTTAGCAACGAGATTCCATAGGGATTTCCTCCCCATTCCTCGAAAATCACGAGCANA
rJMFF031F22+ CGTTTTAGCAACGAGATTCCATAGGGATTTCCTCCCCATTCCTCGAAAATCACGAGCAGA
rJMFF033M24+ CGTTTTAGCAACGAGATTCCATAGGGATTTCCTCCCCATTCCTCGAAAATCACGAGCAGA
rJMSF021F22+ CGTTTTAGCAACGAGATTCCATAGGGATTTCCTCCCCATTCCTCGAAAATCACGAGCAGA
____________________________________________________________
consensus CGTTTTAGCAACGAGATTCCATAGGGATTTCCTCCCCATTCCTCGAAAATCACGAGCAGA

. : . : . : . : . : . :
rJMFF018H13+ TTGCCCGTTGGGCGTAGCCAGGACCGGGGGAACATGGTACCATCTCTGTGAAGCCTCTCC
rJMFF031F22+ TTGCCCGTTGGGCGTAGCCAGGACCGGGG-AACATGGTACCATCTCTGTGAAGCCTCTCC
rJMFF033M24+ TTGCCCGTTGGGCGTAGCCA
rJMSF021F22+ TTGCCCGTTGGGCGTAGCCAGGACCGGGG-AACATGGTACCATCTCTGTGAAGCCTCTCC
____________________________________________________________
consensus TTGCCCGTTGGGCGTAGCCAGGACCGGGG-AACATGGTACCATCTCTGTGAAGCCTCTCC

. : . : . : . : . : . :
rJMFF018H13+ ACAGTTGCTTAGGCACTTTCTCTCGTCAAACCAACCTGCAT
rJMFF031F22+ ACAGTTGCTTAAGCACTTTCTCTCGTCAAACCAACCTGCAT
rJMSF021F22+ ACAGTTGCTTANGCACTTTCTCTCGTCAAACCAACCTGCATAGTTGCAGAAACTGCAGCC
____________________________________________________________
consensus ACAGTTGCTTAAGCACTTTCTCTCGTCAAACCAACCTGCATAGTTGCAGAAACTGCAGCC

. : . : . : . : . : . :
rJMSF021F22+ ATCGTCGGGCGCTTTGTTTCCAGGCCAATGGCGTCCATGCTGTTACCGTTTATCCATACT
____________________________________________________________
consensus ATCGTCGGGCGCTTTGTTTCCAGGCCAATGGCGTCCATGCTGTTACCGTTTATCCATACT

. : . : . : . : . : . :
rJMSF021F22+ TGGCCNTTGCTCATCGNGCTCATGTCC
____________________________________________________________
consensus TGGCCNTTGCTCATCGNGCTCATGTCC