Alignment Contig 6978

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF047E14+ CTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTTCGCATGCAAATTTTTCTAG
rJMFF010J06+ GCAAATTTTTCTAG
rJMCP016B01- AG
rJMFF005C13+ ATTTTTCNAG
rJMFF018O23+ ATTTCTCTAG
rJMFF027L09+ GCAAATTTTTCTAG
rJMSF050C11+ AATTTTTCTAG
____________________________________________________________
consensus CTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTTCGCATGCAAATTTTTCTAG

. : . : . : . : . : . :
rJMFF047E14+ TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMFF010J06+ TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMCP016B01- TATAACAATAAAATGTTTATTCCCTTActctacatTCAGTGTTCAACAACCAGCATAAAG
rJMFF030B19+ GTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMFF005C13+ TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMFF018O23+ TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMFF027L09+ TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMSF050C11+ TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG
rJMSF023B13+ ACAACCAGCATAAAG
____________________________________________________________
consensus TATAACAATAAAATGTTTATTCCCTTACTCTACATTCAGTGTTCAACAACCAGCATAAAG

. : . : . : . : . : . :
rJMFF047E14+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMFF010J06+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMCP016B01- AGAGTAAGGACAATCCAGAAGAAGCAGAAgctGAAAcCTCctACTCAACATCCTTATTTA
rJMFF030B19+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMFF005C13+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMFF018O23+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMFF027L09+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMSF050C11+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
rJMSF023B13+ AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA
____________________________________________________________
consensus AGAGTAAGGACAATCCAGAAGAAGCAGAAGCTGAAACCTCCTACTCAACATCCTTATTTA

. : . : . : . : . : . :
rJMFF047E14+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
rJMFF010J06+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
rJMCP016B01- TGTTTTACactTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTtcttct
rJMFF030B19+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
rJMFF005C13+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTCCTTCT
rJMFF018O23+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
rJMFF027L09+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
rJMSF050C11+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
rJMSF023B13+ TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT
____________________________________________________________
consensus TGTTTTACACTTTGTTTTGAATAGCAATGAGCTTTGGTAACCATCAAATTTACTTCTTCT

. : . : . : . : . : . :
rJMFF047E14+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMFF010J06+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMCP016B01- GGGATTTGAGTtCttctacTcgcCTTTCGGTCTCCCTCAACGCCTCCccgTaTatactGa
rJMFF030B19+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMFF005C13+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMFF018O23+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMFF027L09+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMSF050C11+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
rJMSF023B13+ GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA
____________________________________________________________
consensus GGGATTTGAGTTCTTCTACTCGCCTTTCGGTCTCCCTCAACGCCTCCCCGTATATACTGA

. : . : . : . : . : . :
rJMFF047E14+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMFF010J06+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMCP016B01- TCaacTCATCAactTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGttATCGC
rJMFF030B19+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMFF005C13+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMFF018O23+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMFF027L09+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMSF050C11+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
rJMSF023B13+ TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC
____________________________________________________________
consensus TCAACTCATCAACTTCCTCGGGAGTCATTATAAACGGAGGAGACATCATTATGTTATCGC

. : . : . : . : . : . :
rJMFF047E14+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAA
rJMFF010J06+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMCP016B01- CAgctACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMFF030B19+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMFF005C13+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMFF018O23+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMFF027L09+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMSF050C11+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
rJMSF023B13+ CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC
____________________________________________________________
consensus CAGCTACACGGACCAGCATCCCCTTTTTCTGACACTGAGCTCCGAAGTAAGCACCAACAC

. : . : . : . : . : . :
rJMFF010J06+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
rJMCP016B01- CCCATTCAGGAGGGAAAGGATCATTAGGAGaCTTGTTGTTAGTAAActCGGTCCCAAGGA
rJMFF030B19+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
rJMFF005C13+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
rJMFF018O23+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
rJMFF027L09+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
rJMSF050C11+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
rJMSF023B13+ CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA
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consensus CCCATTCAGGAGGGAAAGGATCATTAGGAGACTTGTTGTTAGTAAACTCGGTCCCAAGGA

. : . : . : . : . : . :
rJMFF010J06+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMCP016B01- TCAAGCCAAGACCtcgAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMFF030B19+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMFF005C13+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMFF018O23+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMFF027L09+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMSF050C11+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
rJMSF023B13+ TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT
____________________________________________________________
consensus TCAAGCCAAGACCTCGAATCTCTCCAATGATAGGACTGTCGGAAAAGGCTTTTATACCAT

. : . : . : . : . : . :
rJMFF010J06+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
rJMCP016B01- CTTGGAATT
rJMFF030B19+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
rJMFF005C13+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
rJMFF018O23+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
rJMFF027L09+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
rJMSF050C11+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
rJMSF023B13+ CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT
____________________________________________________________
consensus CTTGGAATTTCGGAGCTATTCTATTAACCTGCTCAATAATATTTCTCTCCTTGTAGATCT

. : . : . : . : . : . :
rJMFF010J06+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
rJMFF030B19+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
rJMFF005C13+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
rJMFF018O23+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
rJMFF027L09+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
rJMSF050C11+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
rJMSF023B13+ TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG
____________________________________________________________
consensus TTACTGCTTCCAATGCCACGGCACAAGATACCGGGTGCCCAGAATAAGTAAAACCATGGG

. : . : . : . : . : . :
rJMFF010J06+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
rJMFF030B19+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
rJMFF005C13+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
rJMFF018O23+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
rJMFF027L09+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
rJMSF050C11+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
rJMSF023B13+ AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA
____________________________________________________________
consensus AGAAAGAACCTAATTTATTGCTTTGGGAATGTATTACATCATATACTTCAGGGCTCACTA

. : . : . : . : . : . :
rJMFF010J06+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGAGA
rJMFF030B19+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGAGA
rJMFF005C13+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGAG
rJMFF018O23+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGA
rJMFF027L09+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATA
rJMSF050C11+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGAGA
rJMSF023B13+ GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGAGACAAGATCAG
____________________________________________________________
consensus GGACAGCCCCAATCGGCATATAAGCAGAAGAAACAGCCTTTGCTATAGAGACAAGATCAG

. : . : . : . : . : . :
rJMSF023B13+ GTTTGATATTATATTTGTCACAGCCGAACATTGNTCCAAGCCTCCCAAACGCACATATTA
____________________________________________________________
consensus GTTTGATATTATATTTGTCACAGCCGAACATTGNTCCAAGCCTCCCAAACGCACATATTA

. : . : . : . : . : . :
rJMSF023B13+ CCTCATCCG
____________________________________________________________
consensus CCTCATCCG