Alignment Contig 6950

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044H08+ CTTTTTTTCATCATAGAATTTTTATTGTCAAACGTGGAACCAGAAAAAATACCACTGCAC
rJMFF040J11+ GCAC
rJMSF032M10+ GCAC
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consensus CTTTTTTTCATCATAGAATTTTTATTGTCAAACGTGGAACCAGAAAAAATACCACTGCAC

. : . : . : . : . : . :
rJMFF044H08+ TTACAAATACTCAATAAACCCAACATACTTGAATAACTCAATATTTGAATGTCTCCCTTC
rJMFF004G07+ ATATTTGAATGTCTCCCTTC
rJMFF040J11+ TTACAAATACTCAATAAACCCAACATATTTGAATAACTCAATATTTGAATGTCTCCCTTC
rJMSF032M10+ TTACAAATACTCAATAAACCCAACATATTTGAATAACTCAATATTTGAATGTCTCCCTTC
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consensus TTACAAATACTCAATAAACCCAACATATTTGAATAACTCAATATTTGAATGTCTCCCTTC

. : . : . : . : . : . :
rJMFF044H08+ ACAAAGCTATAAGCTTTATCCTCCCCTTCCCCAAACCCACATCTAGGCAACAACAGATCT
rJMFF004G07+ ACAAAGCTATAAGCTTTATCCTCCCCTTCCCCAAACCCACATCTAGGCAACAACAGATCT
rJMFF040J11+ ACAAAGCTATAAGCTTTATCCTCCCCTTCCCCAAACCCACATCTAGGCAACAACAGATCT
rJMSF032M10+ ACAAAGCTATAAGCTTTATCCTCCCCTTCCCCAAACCCACATCTAGGCAACAACAGATCT
rJMSF019J14+ AAGCTATAAGCTTTATCCTCCCCTTCCCCAAACCCACATCTAGGCAACAACAGATCT
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consensus ACAAAGCTATAAGCTTTATCCTCCCCTTCCCCAAACCCACATCTAGGCAACAACAGATCT

. : . : . : . : . : . :
rJMFF044H08+ AATATCTACACCCAAATCTTGATCTCTCCCTTTCTGGTAATAAAGGTTAGTCAACAGCTA
rJMFF004G07+ AATATCTACACCCAAATCTTGATCTCTCCCTTTCTGGTAATAAAGGTTAGTCAACAGCTA
rJMFF040J11+ AATATCTACACCCAAATCTTGATCTCTCCCTTTCTGGTAATAAAGGTTAGTCAACAGCTA
rJMSF032M10+ AATATCTACACCCAAATCTTGATCTCTCCCTTTCTGGTAATAAAGGTTAGTCAACAGCTA
rJMSF019J14+ AATATCTACACCCAAATCTTGATCTCTCCCTTTCTGGTAATAAAGGTTAGTCAACAGCTA
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consensus AATATCTACACCCAAATCTTGATCTCTCCCTTTCTGGTAATAAAGGTTAGTCAACAGCTA

. : . : . : . : . : . :
rJMFF044H08+ TAATTCTTACATCATACATTGCATGCTGTGATCTATATATGCCCCCAAAGGCCTGACCTT
rJMFF004G07+ TAATTCTTACATCATACATTGCATGCTGTGATCTATATATGCCCCCAAAGGCCTGACCTT
rJMFF040J11+ TAATTCTTACATCATACATTGCATGCTGTGATCTATATATGCCCCCAAAGGCCTGACCTT
rJMSF032M10+ TAATTCTTACATCATACATTGCATGCTGTGATCTATATATGCCCCCAAAGGCCTGACCTT
rJMSF019J14+ TAATTCTTACATCATACATTGCATGCTGTGATCTATATATGCCCCCAAAGGCCTGACCTT
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consensus TAATTCTTACATCATACATTGCATGCTGTGATCTATATATGCCCCCAAAGGCCTGACCTT

. : . : . : . : . : . :
rJMFF044H08+ GAATTACAGCTTCTTAGCTTGCCAGAAATCCCTTGTTGAACTAGAAGTCTAGAATAGGGC
rJMFF004G07+ GAATTACAGCTTCTTAGCTTGCCAGAAATCCCTTGTTGAACTAGAAGTCTAGAATAGGGC
rJMFF040J11+ GGATTACAGCTTCTTAGCTTGCCAGAAATCCCTTGTTGAACTAGAAGTCTAGAATAGGGC
rJMSF032M10+ GAATTACAGCTTCTTAGCTTGCCAGAAATCCCTTGTTGAACTAGAAGTCTAGAATAGGGC
rJMSF019J14+ GAATTACAGCTTCTTAGCTTGCCAGAAATCCCT-GTTGAACTAGAAGTCTAGAATAGGGC
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consensus GAATTACAGCTTCTTAGCTTGCCAGAAATCCCTTGTTGAACTAGAAGTCTAGAATAGGGC

. : . : . : . : . : . :
rJMFF044H08+ ATTCCAGAGAGTTTCTTCACCCTCGCCACACTTTTCATGCACAAACTTTATCTTCTCTAC
rJMFF004G07+ ATTCCAGAGAGTTTCTTCACCCTCGCCACACTTTTCATGCACAAACTTTATCTTCTCTAC
rJMFF040J11+ ATTCCAGAGAGTTTCTTCACCCTCGCCACACTTTTCATGCACAAACTTTATCTTCTCTAC
rJMSF032M10+ ATTCCAGAGAGTTTCTTCACCCTCGCCACACTTTTCATGCACAAACTTTATCTTCTCTAC
rJMSF019J14+ ATTCCAGAGAGTTTCTTCACCCTCGCCACACTTTTCATGCACAAACTTTATCTTCTCTAC
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consensus ATTCCAGAGAGTTTCTTCACCCTCGCCACACTTTTCATGCACAAACTTTATCTTCTCTAC

. : . : . : . : . : . :
rJMFF044H08+ TGATTTGCAAATTCCACTGCAGCTCCAGTCGAAGGAAGCTACACATACATTGCCTGCCTG
rJMFF004G07+ TGATTTGCAAATTCCACTGCAGCTCCAGTCGAAGGAAGCTACACATACATTGCCTGCCTG
rJMFF040J11+ TGATTTGCAAATTCCACTGCAGCTCCAGTCGAAGGAAGCTACACATACATTGCCTGCCTG
rJMSF032M10+ TGATTTGCAAATTCCACTGCAGCTCCAGTCGAAGGAAGCTACACATACATTGCCTGCCTG
rJMSF019J14+ TGATTTGCAAATTCCACTGCAGCTCCAGTCGAAGGAAGCTACACATACATTGCCTGCCTG
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consensus TGATTTGCAAATTCCACTGCAGCTCCAGTCGAAGGAAGCTACACATACATTGCCTGCCTG

. : . : . : . : . : . :
rJMFF044H08+ GGCCTTCCACTCACAGTCTGGTGGAGTTCCACAACACATGGTTCGTTCATCAATATGGTC
rJMFF004G07+ GGCCTTCCACTCACAGTCTGGTGGAGTTCCACAACACATGGTTCGTTCATCAATACGGTC
rJMFF040J11+ GGCCTTCCACTCACAGTCTGGTGGAGTTCCACAACACATGGTTCGTTCATCAATATGGTC
rJMSF032M10+ GGCCTTCCACTCACAGTCTGGTGGAGTTCCACAACACATGGTTCGTTCATCAATATGGTC
rJMSF019J14+ GGCCTTCCACTCACAGTCTGGTGGAGTTCCACAACACATGGTTCGTTCATCAATATGGTC
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consensus GGCCTTCCACTCACAGTCTGGTGGAGTTCCACAACACATGGTTCGTTCATCAATATGGTC

. : . : . : . : . : . :
rJMFF044H08+ AACTTCAAGACCAATGAACCAAGCACCCAGGGAAACATCTTCATTAGCATACTTGTGCAA
rJMFF004G07+ AACTTCAAGACCAATGAACCAAGCACCCAGGGAAACATCTTCATTAGCATACTTGTGCAA
rJMFF040J11+ AACTTCAAGACCAATGAACCAAGCACCCAGGGAAACATCTTCATTAGCATACTTGTGCAA
rJMSF032M10+ AACTTCAAGACCAATGAACCAAGCACCCAGGGAAACATCTTCATTAGCATACTTGTGCAA
rJMSF019J14+ AACTTCAAGACCAATGAACCAAGCACCCAGGGAAACATCTTCATTAGCATACTTGTGCAA
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consensus AACTTCAAGACCAATGAACCAAGCACCCAGGGAAACATCTTCATTAGCATACTTGTGCAA

. : . : . : . : . : . :
rJMFF044H08+ GATTGGCTGGTTGATTGAAA
rJMFF004G07+ GATTGGC
rJMFF040J11+ GATTGGC
rJMSF032M10+ GATTGGC
rJMSF019J14+ GATTGGCTGGTTGATTGAAATGTATGTAGCTAAATCCTTTGAAATGGCATAAATTTGCCC
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consensus GATTGGCTGGTTGATTGAAATGTATGTAGCTAAATCCTTTGAAATGGCATAAATTTGCCC

. : . : . : . : . : . :
rJMSF019J14+ AGTAGCATGTCGAAAGTATTTGTTCCCTTCTTCTCCAAATTTCCAAGACTCTGGTTCATG
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consensus AGTAGCATGTCGAAAGTATTTGTTCCCTTCTTCTCCAAATTTCCAAGACTCTGGTTCATG

. : . : . : . : . : . :
rJMSF019J14+ GTATTTGACATTCTTTTGGGAAAGAACAGGTCCAGATTTCATACACCCAATGTAAACTCT
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consensus GTATTTGACATTCTTTTGGGAAAGAACAGGTCCAGATTTCATACACCCAATGTAAACTCT

. : . : . : . : . : . :
rJMSF019J14+ GGGCTTCGACCGGTGGCGGCCAAGAGTTGCAGCGAGCATACCCAAATTGACATGGACATC
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consensus GGGCTTCGACCGGTGGCGGCCAAGAGTTGCAGCGAGCATACCCAAATTGACATGGACATC

. : . : . : . : . : . :
rJMSF019J14+ ATCATCAACCTTGACATAGAAATCGGCATCCCACTTTG
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consensus ATCATCAACCTTGACATAGAAATCGGCATCCCACTTTG