Alignment Contig 6945

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044D01+ ATTTTTTTTTTTTTTAAGTATTTAACGCAATACCATTAAAAACAACAAACAAGATAGTTG
rJMFF046J13+ ATTTAACGCAATACCATTAAAAACAACAAACAAGATAGTTG
rJMFF017K06+ CAAACAAGATAGTTG
rJMFF026K23+ CAAACAAGATAGTTG
rJMFF023G16+ AAACAAGATAGTTG
rJMSF036M15+ AACANGATAGTTG
rJMSF021A24+ AGATAGTTG
rJMFF025A12+ GTTG
____________________________________________________________
consensus ATTTTTTTTTTTTTTAAGTATTTAACGCAATACCATTAAAAACAACAAACAAGATAGTTG

. : . : . : . : . : . :
rJMFF044D01+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMFF046J13+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMFF017K06+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMFF026K23+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMFF023G16+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMSF036M15+ CATNCATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMSF021A24+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
JMFN011K08- GAACACCATCCCAAACATGTGGGACTTT
rJMFF025A12+ CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMFF020H23+ CATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
rJMFF030E18+ ATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT
____________________________________________________________
consensus CATACATAAGTGCAAGAAAAGCACAAAAGTTTGAACACCATCCCAAACATGTGGGACTTT

. : . : . : . : . : . :
rJMFF044D01+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF046J13+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF017K06+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF026K23+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF023G16+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMSF036M15+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMSF021A24+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
JMFN036P18- GTTCAATGTAGGCAAATTCA
JMFN011K08- AT-ACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF025A12+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF020H23+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
rJMFF030E18+ ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA
____________________________________________________________
consensus ATTACAGCAGCCTGAGAAGCAAACCACATACATTCTTATAGTTCAATGTAGACAAATTCA

. : . : . : . : . : . :
rJMFF044D01+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF046J13+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF017K06+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF026K23+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF023G16+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMSF036M15+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMSF021A24+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
JMFN036P18- AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
JMFN011K08- AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF025A12+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF020H23+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
rJMFF030E18+ AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG
____________________________________________________________
consensus AAAACACATATAATATGAGGGAAATTTATTATTAAGGCAGGAAATAGGAATCCTGTTGGG

. : . : . : . : . : . :
rJMFF044D01+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF046J13+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF017K06+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF026K23+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF023G16+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMSF036M15+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMSF021A24+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
JMFN036P18- AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
JMFN011K08- AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF025A12+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF020H23+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
rJMFF030E18+ AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG
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consensus AAGGCAACCTGCCAATTATGCTTAATCATTATACTGCACGCGATGGTGGTGATGGTGATG

. : . : . : . : . : . :
rJMFF044D01+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMFF046J13+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMFF017K06+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMFF026K23+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMFF023G16+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMSF036M15+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMSF021A24+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
JMFN036P18- CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
JMFN011K08- CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCA-AGCTGTC
rJMFF025A12+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMFF020H23+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
rJMFF030E18+ CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC
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consensus CCTCTCACGCTCCTCATCATCTTCATCCCTACCCCCATATTTCTTGCGACCATAGCTGTC

. : . : . : . : . : . :
rJMFF044D01+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF046J13+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF017K06+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF026K23+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF023G16+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMSF036M15+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCACCATT
rJMSF021A24+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
JMFN036P18- ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTGTCATCATCATCA
JMFN011K08- ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF025A12+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF020H23+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
rJMFF030E18+ ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT
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consensus ATCATCATCATCATCATCACGCCTCTGCCTGCGACCATAGCTCTCATCATCATCATCATT

. : . : . : . : . : . :
rJMFF044D01+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF046J13+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF017K06+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF026K23+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF023G16+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMSF036M15+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMSF021A24+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
JMFN011K08- ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF025A12+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF020H23+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
rJMFF030E18+ ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG
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consensus ACGCCTCTGGTAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGG

. : . : . : . : . : . :
rJMFF044D01+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMFF046J13+ TTTCCGGTACTCATCTTCATCACT
rJMFF017K06+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMFF026K23+ TTTCCGGTACTCATCTTCATCACTGGACCTCCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMFF023G16+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMSF036M15+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMSF021A24+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
JMFN011K08- TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMFF025A12+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMFF020H23+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
rJMFF030E18+ TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC
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consensus TTTCCGGTACTCATCTTCATCACTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTC

. : . : . : . : . : . :
rJMFF044D01+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMFF017K06+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMFF026K23+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMFF023G16+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMSF036M15+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMSF021A24+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
JMFN011K08- ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCA
rJMFF025A12+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMFF020H23+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
rJMFF030E18+ ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA
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consensus ATCATTGGACCTTCCATAGCTAGGTTTCCTGTACTCCTCTTCATCATTGGACCTTCCATA

. : . : . : . : . : . :
rJMFF044D01+ GCTAGGTTTCCG
rJMFF017K06+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMFF026K23+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMFF023G16+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMSF036M15+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMSF021A24+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMFF025A12+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMFF020H23+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
rJMFF030E18+ GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA
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consensus GCTAGGTTTCCGGTACTCCTCTTCATCATTGGACCTTCCATAGCTAGGCCTATCATAGGA

. : . : . : . : . : . :
rJMFF017K06+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
rJMFF026K23+ AGATCTCCCATAACCTTTACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
rJMFF023G16+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
rJMSF036M15+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
rJMSF021A24+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
rJMFF025A12+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGC
rJMFF020H23+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
rJMFF030E18+ AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG
____________________________________________________________
consensus AGATCTCCCATAACCTTCACTCTCCTCAGAACGGCCATAGCTAGGCCTGTCCTCCTCCCG

. : . : . : . : . : . :
rJMFF017K06+ CCCATAGCTTGGCTTCCTACCGGATCCATACTCGGATTCGGATTCGTTACGACGCCCATA
rJMFF026K23+ CCCATAGCTTGGCTTCCTACCGGATCCATACTC
rJMFF023G16+ CCCATAGCTTGGCTTCCTACCGGATCCATACTCGGATTCGGATTCGTTACGACGCCCATA
rJMSF036M15+ CCCATAGCTTGGCTTCCTACCGGATCCATACTC
rJMSF021A24+ CCCATAGCTTGGCTTCCTACCGGATCCATACTCGGATTCGGATTCGTTACGACGCCCATA
rJMFF020H23+ CCCATAGCTTGGCTTCCTACCGGATCCATACTCG
rJMFF030E18+ CCCATAGCTTGGCTTCCTACCGGATCCATACTCGG
____________________________________________________________
consensus CCCATAGCTTGGCTTCCTACCGGATCCATACTCGGATTCGGATTCGTTACGACGCCCATA

. : . : . : . : . : . :
rJMFF017K06+ TCCAGATCCGTATTC
rJMFF023G16+ TCCAGAT
rJMSF021A24+ TCCAGATCCGTATTCGGAT
____________________________________________________________
consensus TCCAGATCCGTATTCGGAT