Alignment Contig 6944

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044B12+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTAGAACAAATTCAAAACTTT
rJMFF014K23+ TAGAACAAATTCAAAACTTT
rJMFF049L03+ TAGAACAAATTCAAAACTTT
rJMFF029A06+ TAGAACAAATTCAAAACTTT
rJMFF014L04+ AATTCAAAACTTT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTAGAACAAATTCAAAACTTT

. : . : . : . : . : . :
rJMFF044B12+ GTTGTTCAACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMFF014K23+ GTTGTTCAACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMFF049L03+ GTTGTTCAACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMFF029A06+ GTTGTTCAACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMFF014L04+ GTTGTTCAACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMSF034O06+ ACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMFF018D16+ GTTGTTCACTTCCGTTTTCA-TTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMFF018E01+ GTTGTTCACTTCCGTTTTCA-TTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMSF024K18+ ATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA
rJMSF034G13+ TTTTTAAGAATACATCACTAAATTTGTTATAACATTA
rJMSF021D19+ CATCACTAAATTTGTTATAACATTA
rJMFF029H15+ ATTTGTTATAACATTA
____________________________________________________________
consensus GTTGTTCAACTTCCGTTTTCAATTTTTAAAGAATACATCACTAAATTTGTTATAACATTA

. : . : . : . : . : . :
rJMFF044B12+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMFF014K23+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMFF049L03+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMFF029A06+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMFF014L04+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMSF034O06+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMFF018D16+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMFF018E01+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMSF024K18+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMSF034G13+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
rJMSF021D19+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACACATCTGCATTTCTTC
rJMFF029H15+ CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC
____________________________________________________________
consensus CATATATACTCTGGACATGACACATTCACACAAACAAATAACACAC-TCTGCATTTCTTC

. : . : . : . : . : . :
rJMFF044B12+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF014K23+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF049L03+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF029A06+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF014L04+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMSF034O06+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF018D16+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF018E01+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMSF024K18+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMSF034G13+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMSF021D19+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
rJMFF029H15+ TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC
____________________________________________________________
consensus TGGAGTCTCCCCTCTTTCAAGTTGAAGTTTAGCCAAGAATCCACTCCGGGTGTCATCGTC

. : . : . : . : . : . :
rJMFF044B12+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMFF014K23+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCNCAACGAGGCCATGATCAAATCAACCT
rJMFF049L03+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMFF029A06+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMFF014L04+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMSF034O06+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMFF018D16+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMFF018E01+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMSF024K18+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMSF034G13+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMSF021D19+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
rJMFF029H15+ TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT
____________________________________________________________
consensus TTAGTCTATAAGACCTAAGACCTTCGTGATGTCGCAACGAGGCCATGATCAAATCAACCT

. : . : . : . : . : . :
rJMFF044B12+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF014K23+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF049L03+ ATAGTCACACATGAAAAAAAA-TAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF029A06+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF014L04+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMSF034O06+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF018D16+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF018E01+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMSF024K18+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMSF034G13+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMSF021D19+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
rJMFF029H15+ ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC
____________________________________________________________
consensus ATAGTCACACATGAAAAAAAAATAAAAATTGGAAGTGTAACCCTCGGCCATCAAGGTTTC

. : . : . : . : . : . :
rJMFF044B12+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF014K23+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF049L03+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF029A06+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF014L04+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMSF034O06+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF018D16+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF018E01+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMSF024K18+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMSF034G13+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMSF021D19+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
rJMFF029H15+ CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG
____________________________________________________________
consensus CAAGGGGCCGGAGGGGGCGGCGGGGTGGGGAACATAGGAGGCACCGCAGAAAATATTGTG

. : . : . : . : . : . :
rJMFF044B12+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMFF014K23+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATANAGCAACAAGGGCAGCCACCAGTCCG
rJMFF049L03+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMFF029A06+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCTGTCCG
rJMFF014L04+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMSF034O06+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMFF018D16+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMFF018E01+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMSF024K18+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMSF034G13+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMSF021D19+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
rJMFF029H15+ TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG
____________________________________________________________
consensus TTTTTGTCAATTCTAGTGCTCCTTTCGCCCGATAGAGCAACAAGGGCAGCCACCAGTCCG

. : . : . : . : . : . :
rJMFF044B12+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMFF014K23+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGNGGAACCCA
rJMFF049L03+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMFF029A06+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMFF014L04+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMSF034O06+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMFF018D16+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMFF018E01+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMSF024K18+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMSF034G13+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMSF021D19+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
rJMFF029H15+ GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA
____________________________________________________________
consensus GCATTGCCAGCAAGCGTCGGCTCCGTGTAGTTGTAGTTGGTGCGGACATCGTGGAACCCA

. : . : . : . : . : . :
rJMFF044B12+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMFF014K23+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMFF049L03+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACNAGGATGTTTGGATTTGGCTTCTTG
rJMFF029A06+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMFF014L04+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMSF034O06+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMFF018D16+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMFF018E01+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMSF024K18+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMSF034G13+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMSF021D19+ TCGNGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
rJMFF029H15+ TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG
____________________________________________________________
consensus TCGTGCGCATCTGGACCGGCAACCATGGCTCCGACAAGGATGTTTGGATTTGGCTTCTTG

. : . : . : . : . : . :
rJMFF044B12+ GAATCCCTCCATTTCCATCC
rJMFF014K23+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMFF049L03+ GAATCCCTCCATTTCCATCC
rJMFF029A06+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMFF014L04+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMSF034O06+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMFF018D16+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMFF018E01+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMSF024K18+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMSF034G13+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMSF021D19+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
rJMFF029H15+ GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT
____________________________________________________________
consensus GAATCCCTCCATTTCCATCCTCCTTTACAGTTGTACCTCACCTTGTTTTTAGGGATTGAT

. : . : . : . : . : . :
rJMFF014K23+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCNAAGCCCACAACATAACTCATC
rJMFF029A06+ GCACCCCGATGGTGGACGTGTTTCGGA
rJMFF014L04+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
rJMSF034O06+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
rJMFF018D16+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
rJMFF018E01+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
rJMSF024K18+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
rJMSF034G13+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
rJMSF021D19+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATANCTCATC
rJMFF029H15+ GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC
____________________________________________________________
consensus GCACCCCGATGGTGGACGTGTTTCGGATAGTGATTGCCAAAGCCCACAACATAACTCATC

. : . : . : . : . : . :
rJMFF014K23+ TTTCTCGGGTTTTTGCCAAGGATGTAGTCGATCTGTGATTCA
rJMFF014L04+ TTTCTCGGGTTTTTGCCAANGATGTAGTCGATCTGTGATTCAGCAAAATTACGCANGATA
rJMSF034O06+ TTTCTCGGGTTT
rJMFF018D16+ TTTCTCGGGTTTTTGCCAAGGATGTAGTCGATCTGTGATTCAGCAAAATTACGCA
rJMFF018E01+ TTTCTCGGGTTTTTGCCAAGGATGTANTCGATCTGTG
rJMSF024K18+ TTTCTCGGGTTTTTGCCAAGGATGTAGTCGATCTGTGATTCAGCAAAATTACGCAGGATA
rJMSF034G13+ TTTCTCGGGTTTTTGCCAAGGATGTAGTCGATCTGTGATTCAGCAAAATTACGCAGGATA
rJMSF021D19+ TTTCTCGGGTTTTTGCCAAGGATGTANTCGATCTG
rJMFF029H15+ TTTCTCGGGTTTTTGCCAAGGATGTAGTCNATCTGTGATTCA
____________________________________________________________
consensus TTTCTCGGGTTTTTGCCAAGGATGTAGTCGATCTGTGATTCAGCAAAATTACGCAGGATA

. : . : . : . : . : . :
rJMFF014L04+ TCAACCGAGTAAAAATTGGGTCCACAATACCATCCAGG
rJMSF024K18+ TCAACCGAGTAGAAATTGGGTCCACAATACCATCCAGGAGCATCGGCGGCTGCTAGAT
rJMSF034G13+ TCAACCGAGTAAAAATTGGGTCCACAATACCATCCAGGAGCATCGGCGGCTGCTAGAT
____________________________________________________________
consensus TCAACCGAGTAAAAATTGGGTCCACAATACCATCCAGGAGCATCGGCGGCTGCTAGAT