Alignment Contig 6936

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF043F23+ CTTTCAAATAAAAAATGACTATGAAGTTTGCAAACCATGAAGTTTTGATAACACAATACC
JMFS059A03+ AACACAATACC
rJMSF041C06+ GTTTGCAAACCATGAAGTTTTGATAACACAATACC
rJMFF026H17+ AACACAATACC
____________________________________________________________
consensus CTTTCAAATAAAAAATGACTATGAAGTTTGCAAACCATGAAGTTTTGATAACACAATACC

. : . : . : . : . : . :
rJMFF043F23+ GCACTGCAATCAAATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCATGCATTTGT
JMFS059A03+ GCACTGCAATCAAATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCATGCATTTGT
rJMSF041C06+ GCACTGCAATCAAATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCATGCATTTGT
rJMSF025M23+ AATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCNTGCATTTGT
rJMFF026H17+ GCACTGCAATCAAATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCATGCATTTGT
rJMSF023O22+ AATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCATGCATTTGT
rJMSF018O22+ ATCTCAATGCATGCATGCATTTGT
____________________________________________________________
consensus GCACTGCAATCAAATCTTCTTCTTTATGAATTTTACATCTCAATGCATGCATGCATTTGT

. : . : . : . : . : . :
rJMFF043F23+ TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTGCACTCATATTGTCAC
JMFS059A03+ TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTGCACTCATATTGTCAC
rJMSF041C06+ TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTGCACTCATATTGTCAC
rJMSF025M23+ TCAATGAAAAAACCNATCTACATATCATCNTCAAACCATGGCCTGCACTCATATTGTCAC
rJMFF026H17+ TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTGCACTCATATTGTCAC
rJMSF023O22+ TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTACACTCATATTGTCAC
rJMSF018O22+ TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTGCACTCATATTGTCAC
____________________________________________________________
consensus TCAATGAAAAAACCAATCTACATATCATCATCAAACCATGGCCTGCACTCATATTGTCAC

. : . : . : . : . : . :
rJMFF043F23+ CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCTCCCAAACG
JMFS059A03+ CCCAAAATCATCTATACCGAAATCCC
rJMSF041C06+ CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCTCCCAAACG
rJMSF025M23+ CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCTCCCAAACG
rJMFF026H17+ CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCCCCCAAACG
rJMSF023O22+ CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCTCCCAAACG
rJMSF018O22+ CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCTCCCAAACG
____________________________________________________________
consensus CCCAAAATCATCTATGCCGAAATCCCGCCTACATTTCTTCCTACAGCAGGCTCCCAAACG

. : . : . : . : . : . :
rJMFF043F23+ GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCAGCACCATTATTTGCGGGGAATGCCCCGA
rJMSF041C06+ GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCAGCACCATTATTTGCGGGGAATGCCCCGA
rJMSF025M23+ GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCATCACCATTATTTGCGGGGAATGCCCCNA
rJMFF026H17+ GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCAGCACCATTATTTGCGGGGAATGCCCCGA
rJMSF023O22+ GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCAGCACCATTATTTGCGGGGAATGCCCCGA
rJMSF018O22+ GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCAGCACCATTATTTGCGGGGAATGCCCCGA
____________________________________________________________
consensus GGTTGGTATTTTGTTGGTGCGCCCCCGCAGCAGCACCATTATTTGCGGGGAATGCCCCGA

. : . : . : . : . : . :
rJMFF043F23+ ACCCCGTGTCGCCAAAAGGATTGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG
rJMSF041C06+ ACCCCGTGTCGCCAAAAGGATTGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG
rJMSF025M23+ ANCCCGTGTCNCCNAAAGGATNGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG
rJMFF026H17+ ACCCCGTGTCGCCAAAAGGATTGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG
rJMSF023O22+ ACCCCGTGTCGCCAAAAGGATTGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG
rJMSF018O22+ ACCCCGTGTCGCCAAAAGGATTGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG
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consensus ACCCCGTGTCGCCAAAAGGATTGTGGGGCCCGACCATCAATGGATTCTGAGGTGGGTATG

. : . : . : . : . : . :
rJMFF043F23+ CAGCAGCAGCCGGATGGAATGGACCGAAGGGGTTTGGTTGAGGCATTGGAGCGAGTTGGA
rJMSF041C06+ CAGCAGCAGCCGGATGGAATGGACCGAAGGGGTTTGGTTGAGGCATTGGAGCGAGTTGGA
rJMSF025M23+ CAGCANCAGCCGGATGGAATGGACCGAAGGGNTTTGGNTGAGGCATTGGAGCGAGTTGGA
rJMFF026H17+ CAGCAGCAGCCGGATGGAATGGACCGAAGGGGTTTGGTTGAGGCATTGGAGCGAGTTGGA
rJMSF023O22+ CAGCAGCAGCCGGATGGAATGGACCGAAGGGGTTTGGTTGAGGCATTGGAGCGAGTTGGA
rJMSF018O22+ CAGCAGCAGCCGGATGGAATGGACCGAAGGGGTTTGGTTGAGGCATTGGAGCGAGTTGGA
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consensus CAGCAGCAGCCGGATGGAATGGACCGAAGGGGTTTGGTTGAGGCATTGGAGCGAGTTGGA

. : . : . : . : . : . :
rJMFF043F23+ CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCGAACGGGT
rJMSF041C06+ CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCGAACGGGT
rJMSF025M23+ CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCAAACGGGT
rJMFF026H17+ CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCGAACGGGT
rJMSF023O22+ CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCGAACGGGT
rJMSF018O22+ CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCGAACGGGT
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consensus CTGATGGAGGTGCAGCAATGGCGTTAGACATGGCAAATGGATCAGCTACTTCGAACGGGT

. : . : . : . : . : . :
rJMFF043F23+ TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGTAGGCGCCCTCGTCGTATA
rJMSF041C06+ TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGTAGGCGCCCTCGTCGTATA
rJMSF025M23+ TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGNANGCGCCCTCGTCGTATA
rJMFF026H17+ TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGTAGGCGCCCTCGTCGTATA
rJMSF023O22+ TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGTAGGCGCCCTCGTCGTATA
rJMSF018O22+ TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGTAGGCGCCCTCGTCGTATA
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consensus TGGGGGCTGGCGCTCCGTATACTGGTTGCTGTGATGCTCTGTAGGCGCCCTCGTCGTATA

. : . : . : . : . : . :
rJMFF043F23+ AACTGTTAAGAGTGAGCGAATCCAATCCACCAGCCAATTGCCGCTCCT
rJMSF041C06+ AACTGTTAAGAGTGAGCGAATCCAATCCACCAGCCAATTGCCGCTCCTGAGGTGTTGACA
rJMSF025M23+ AACTGTTAANAGTGAGCGAATCCAATCCACCAGNCAATTGCCGCTCCTGAGGTGTTGACA
rJMFF026H17+ AACTGTTAAGAGTGAGCGAATCCAATCCACCAGCCAATTGCCGCTCCTGAGGTGTTGACA
rJMSF023O22+ AACTGTTAAGAGTGAGCGAATCCAATCCACCAGCCAATTGCCGCTCCTGAGGTGTTGACA
rJMSF018O22+ AACTGTTAAGAGTGAGCGAATCCAATCCACCAGCCAATTGCCGCTCCTGAGGTGTTGACA
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consensus AACTGTTAAGAGTGAGCGAATCCAATCCACCAGCCAATTGCCGCTCCTGAGGTGTTGACA

. : . : . : . : . : . :
rJMSF041C06+ AGTTGGTGCCGGGAGTACTGACTAGGGCGAGTTCCCATCCTGTAGGATCGAAGTCTTTGG
rJMSF025M23+ ANTTGNTGCCGGGAGTACTGACTAGGGCGAGTTCCCATCCTGTACGATCGAANTCTTTGG
rJMFF026H17+ AGTTGGTGCCGGGAGTACTGACTAGGGCGAGTTCCCATCCTGTAGGATCGAAGTCTTTGG
rJMSF023O22+ AGTTGGTGCCGGGAGTACTGACTAGGGCGAGTTCCCATCCTGTAGGATCGAAGTCTTTGG
rJMSF018O22+ AGTTGGTGCCGGGAGTACTGACTAGGGCGAGTTCCCATCCTGTAGGATCGAAGTCTTTGG
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consensus AGTTGGTGCCGGGAGTACTGACTAGGGCGAGTTCCCATCCTGTAGGATCGAAGTCTTTGG

. : . : . : . : . : . :
rJMSF041C06+ GCTGTACAGTTTCGGATGTTGCCCNAGATGGAA-CTATAGCCAAAGCCAACGCGTTGCTT
rJMSF025M23+ GCTGTACAGTTTCGGATGTTGCCCCAGATGGAA-CTATANCCAAAGCCAACGCGTTGCTT
rJMFF026H17+ GCTGTACAGTTTCGGATGTTGCCCCAGATGGAAACTATAGCCAAAGCCAACGCGTTGCTT
rJMSF023O22+ GCTGTACAGTTTCGGATGTTGCCCCAGATGGAA-CTATAGCCAAAGCCAACG--TTGCTT
rJMSF018O22+ GCTGTACAGTTTCGGATGTTGCCCCAGATGGAA-CTATAGCCAAAGCCAACGCGTTGCTT
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consensus GCTGTACAGTTTCGGATGTTGCCCCAGATGGAA-CTATAGCCAAAGCCAACGCGTTGCTT

. : . : . : . : . : . :
rJMSF041C06+ TCCTCANTCGCAGACACATCTGACGTGGGAGCATTTAACC
rJMSF025M23+ TCCTCAATCGCAGACACATCTGA
rJMFF026H17+ TCCTCAATCGCAGACACATCTGAC
rJMSF023O22+ TCCTCAATCGCAGACACATCTGACGTGGGAGCATTTAACCCAAGTAGATCATCGGTTTCA
rJMSF018O22+ TCCTCAATCGCAGACACATCTGACGTGGGAGCATTTAACCCAAGTAGATCATCGGTTTCA
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consensus TCCTCAATCGCAGACACATCTGACGTGGGAGCATTTAACCCAAGTAGATCATCGGTTTCA

. : . : . : . : . : . :
rJMSF023O22+ AATTTGACAGGAGGCACGGGGGCAGGAATCTCGGTGGTTGAAACTGCAACATCCTCTGCT
rJMSF018O22+ AATTTGACAGGAGGCACGGGGGCAGGAATCTCGGTGGTTGAAACTGCAACATCCTCTGCT
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consensus AATTTGACAGGAGGCACGGGGGCAGGAATCTCGGTGGTTGAAACTGCAACATCCTCTGCT

. : . : . : . : . : . :
rJMSF023O22+ GGT
rJMSF018O22+ GGTTGTGGTGGTGGCGGGGGT
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consensus GGTTGTGGTGGTGGCGGGGGT