Alignment Contig 6875

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF027M21+ TCTCCACCTGTTAAGAGTCAAAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT
rJMSF048J21+ AGAGTCAAAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT
rJMSF052H24+ AGAGTCAAAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT
rJMSF038L09+ AGAGTCAAAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT
rJMSF009G14+ AAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT
rJMSF026M14+ AAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT
____________________________________________________________
consensus TCTCCACCTGTTAAGAGTCAAAAATTTAAGTCCTCAGATATTACAAAAGAAAAAAGGTTT

. : . : . : . : . : . :
rJMFF027M21+ GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT
rJMSF048J21+ GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT
rJMSF052H24+ GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT
rJMSF038L09+ GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT
rJMSF009G14+ GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT
rJMSF026M14+ GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT
____________________________________________________________
consensus GTATGTATGGCCAATTACAAGCAATAAAAGATTCTCTGCTATTCCCTCTTCAAATTTGTT

. : . : . : . : . : . :
rJMFF027M21+ GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT
rJMSF048J21+ GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT
rJMSF052H24+ GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT
rJMSF038L09+ GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT
rJMSF009G14+ GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT
rJMSF026M14+ GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT
____________________________________________________________
consensus GACATTCCCAGTTGAATCATAGAAGCAAGCACTTGTCAGCATATAACTTCGAAACCGTCT

. : . : . : . : . : . :
rJMFF027M21+ TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT
rJMSF048J21+ TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT
rJMSF052H24+ TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT
rJMSF038L09+ TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT
rJMSF009G14+ TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT
rJMSF026M14+ TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT
____________________________________________________________
consensus TTTCCGGGGAACTGAAAGGCAGTCATAACTATTCATGAACAAACCATTGGCAGCAGCACT

. : . : . : . : . : . :
rJMFF027M21+ CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA
rJMSF048J21+ CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA
rJMSF052H24+ CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA
rJMSF038L09+ CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA
rJMSF009G14+ CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA
rJMSF026M14+ CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA
____________________________________________________________
consensus CTACAAGCTTATTATGTTCTGCCTTTCTGTAGGGGCAACACACTGCCATAACGAACGATA

. : . : . : . : . : . :
rJMFF027M21+ AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
rJMSF048J21+ AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
rJMSF052H24+ AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
rJMSF038L09+ AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
JMFN013I06- AGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
rJMSF009G14+ AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
rJMSF026M14+ AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT
____________________________________________________________
consensus AGAAGGAATTGTAGCAGCATCGATCCCTAAGGAAGAAAGGTTCCGGGCATATTCCTGAAT

. : . : . : . : . : . :
rJMFF027M21+ ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
rJMSF048J21+ ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
rJMSF052H24+ ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
rJMSF038L09+ ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
JMFN013I06- ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
rJMSF009G14+ ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
rJMSF026M14+ ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC
____________________________________________________________
consensus ATCGAGGAACAACTGCATACAGATCTTGTCGGTATCAGATATGTTATGATCTGAAACGTC

. : . : . : . : . : . :
rJMFF027M21+ TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
rJMSF048J21+ TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
rJMSF052H24+ TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
rJMSF038L09+ TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
JMFN013I06- TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
rJMSF009G14+ TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
rJMSF026M14+ TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT
____________________________________________________________
consensus TGAGCTTGCTCCAGCTCGTCTTTGAGCGCCCAAACGTATCTTCTGAAGTGAAGACTCTGT

. : . : . : . : . : . :
rJMFF027M21+ TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA
rJMSF048J21+ TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA
rJMSF052H24+ TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTT-GAA
rJMSF038L09+ TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA
JMFN013I06- TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA
rJMSF009G14+ TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA
rJMSF026M14+ TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA
____________________________________________________________
consensus TTTCCGAGCCACATTGACAAGGTCTGCAGCTAATTCATAGTAACGATCAGTAATTTTGAA

. : . : . : . : . : . :
rJMFF027M21+ GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
rJMSF048J21+ GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
rJMSF052H24+ GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
rJMSF038L09+ GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
JMFN013I06- GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
rJMSF009G14+ GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
rJMSF026M14+ GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC
____________________________________________________________
consensus GGCGGCACCTTGCAAGAGCTCGAATCTCAGCTCCTTAGTTAAGTATGTTGTAGCCCGTTC

. : . : . : . : . : . :
rJMFF027M21+ TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
rJMSF048J21+ TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
rJMSF052H24+ TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
rJMSF038L09+ TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
JMFN013I06- TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
rJMSF009G14+ TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
rJMSF026M14+ TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC
____________________________________________________________
consensus TCCATCCAAAAAAGTCTTTAATGGCCGGAGTACACCTGAAACATATGGGGAATGCCTGAC

. : . : . : . : . : . :
rJMFF027M21+ AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC
rJMSF048J21+ AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTA
rJMSF052H24+ AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC
rJMSF038L09+ AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC
JMFN013I06- AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC
rJMSF009G14+ AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC
rJMSF026M14+ AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC
____________________________________________________________
consensus AGGTAGGGGCTTGTTTGTCATCCTATATGTAGCAGTTATCCCCTTCAGTTGTCTAATGTC

. : . : . : . : . : . :
rJMFF027M21+ ACCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCAC
rJMSF052H24+ ATCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCACAAGGGGCAGAAGATC
rJMSF038L09+ ATCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCACAAGGGGCAGAAGATC
JMFN013I06- ATCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCACAAGGGGCAGAAGATC
rJMSF009G14+ ATCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCACAAGG
rJMSF026M14+ ATCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCACAAG
____________________________________________________________
consensus ATCCACAGCCCTCTCAACTATTGTCTCAACTATCGCGCTTATCACAAGGGGCAGAAGATC

. : . : . : . : . : . :
rJMSF052H24+ TTTAAGGGACTTTGCACCTTGTAAAATACTTTGTTTTACAAAATCAAGTACTTCAGTTGA
rJMSF038L09+ TTTAAGGGACTTTGCACCTTGTAAAATACTTTGTTTTACAAAATCAAGTACTTCAGTTGA
JMFN013I06- TTTAAGGGACTTTGCACCTTGTAAAATACTTTGTTTTACAAAATCAAGTACTTCAGTTGA
____________________________________________________________
consensus TTTAAGGGACTTTGCACCTTGTAAAATACTTTGTTTTACAAAATCAAGTACTTCAGTTGA

. : . : . : . : . : . :
rJMSF052H24+ GCAAGACTTGAGCAAACTCAAGTACATGAGCAAGGTATGCACCACAAACTTCTTCTGCCA
rJMSF038L09+ GCAAGACTTGAGCAA-CTCAAGTACATGAGCAAGGTATGCACCACAAACTTCTTCTGCCA
JMFN013I06- GCAAGACTTGAGCAA-CTCAAGTACATGAGCAAGGTATGCACCACAAACTTCTTCTGCCA
____________________________________________________________
consensus GCAAGACTTGAGCAA-CTCAAGTACATGAGCAAGGTATGCACCACAAACTTCTTCTGCCA

. : . : . : . : . : . :
rJMSF052H24+ AGCAATTCAA
rJMSF038L09+ AGCAATTCAATCATGAATTATAAAGACNAAAGTCATCTG
JMFN013I06- AGCAATTCAA
____________________________________________________________
consensus AGCAATTCAATCATGAATTATAAAGACNAAAGTCATCTG