Alignment Contig 6826

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF016D18+ CATCATAGTATTATTACATAGAAAAAGCTTCNCCCNAACCACCCCTTATACNCCTCTCTT
rJMFF020E04+ AACCACCCCTTATACACCTCTCTT
rJMFF027I17+ ACCCCTTATACACCTCTCTT
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consensus CATCATAGTATTATTACATAGAAAAAGCTTCNCCCNAACCACCCCTTATACACCTCTCTT

. : . : . : . : . : . :
rJMFF016D18+ TGCTTCAAACTCCTAAATCCTAAGCCGTTCAAACTACAAAATGCTAAAACCTCTCCCTCC
rJMFF020E04+ TGCTTCAAACTCCTAAATCCTAAGCCGTTCAAACTACAAAATGCTAAAACCTCTCCCTCC
rJMFF027I17+ TGCTTCAA-CTCCTAAATCCTAAGCCGTTCAAACTACAAAATGCTAAAACCTCTCCCTCC
rJMFF023A01+ AACTCCTAAATCCTAAGCCGTTCAAACTACAAAATGCTAAAACCTCTCCCTCC
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consensus TGCTTCAAACTCCTAAATCCTAAGCCGTTCAAACTACAAAATGCTAAAACCTCTCCCTCC

. : . : . : . : . : . :
rJMFF016D18+ AGGCAACATAGAAGGAAAACAGAATAAAATTATCTTAATTTTACAAACTGAAACCTTATT
rJMFF020E04+ AGGCAACATAGAAGGAAAACAGAATAAAATTATCTTAATTTTACAAACTGAAACCTTATT
rJMFF027I17+ AGGCAACATAGAAGGAAAACAGAATAAAATTATCTTAATTTTACAAACTGAAACCTTATT
rJMFF023A01+ AGGCAACATAGAAGGAAAACAGAATAAAATTATCTTAATTTTACAAACTGAAACCTTATT
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consensus AGGCAACATAGAAGGAAAACAGAATAAAATTATCTTAATTTTACAAACTGAAACCTTATT

. : . : . : . : . : . :
rJMFF016D18+ TTGGTCCAAATTCTAGGATTACCCAAATGGGCAATCTCAAAAAAATAAAATAAAAGGAAG
rJMFF020E04+ TTGGTCCAAATTCTAGGATTACCCAAATGGGCAATCTCAAAAAAAATAAAATAAAAGAAG
rJMFF027I17+ TTGGTCCAAATTCTAGGATTACCCAAATGGGCAATCTCAAAAAAAATAAAATAAAAGAAG
rJMFF023A01+ TTGGTCCAAATTCTAGGATTACCCAAATGGGCAATCTCAAAAAAAATAAAATAAAAGAAG
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consensus TTGGTCCAAATTCTAGGATTACCCAAATGGGCAATCTCAAAAAAAATAAAATAAAAGAAG

. : . : . : . : . : . :
rJMFF016D18+ TAANAGACAGATATCACTGCAGCACAAGAACTCAAAAACATTGATGTACTGATTATACAA
rJMFF020E04+ TAAAAGACAGATATCACTGCAGCACAAGAACTCAAAAACATTGATGTACTGATTATACAA
rJMFF027I17+ TAAAAGACAGATATCACTGCAGCACAAGAACTCAAAAACATTGATGTACTGATTATACAA
rJMFF023A01+ TAAAAGACAGATATCACTGCAGCACAAGAACTCAAAAACATTGATGTACTGATTATACAA
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consensus TAAAAGACAGATATCACTGCAGCACAAGAACTCAAAAACATTGATGTACTGATTATACAA

. : . : . : . : . : . :
rJMFF016D18+ NGGAAGTTCACTCTTTGCTTGAGAAGATATACTGATATACAGTGAAATGCATGCTCTTAA
rJMFF020E04+ GGGAAGTTCACTCTTTGCTTGAGAAGATATACTGATATACAGTGAAATGCATGCTCTTAA
rJMFF027I17+ GGGAAGTTCACTCTTTGCTTGAGAAGATATACTGATATACAGTGAAATGCATGCTCTTAA
rJMFF023A01+ GGGAAGTTCACTCTTTGCTTGAGAAGATATACTGATATACAGTGAAATGCATGCTCTTAA
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consensus GGGAAGTTCACTCTTTGCTTGAGAAGATATACTGATATACAGTGAAATGCATGCTCTTAA

. : . : . : . : . : . :
rJMFF016D18+ CCTGTATGTATGTAATGGTGTAACTCCNCAAATANCCGGTNTGGTGTAGNTTTACTAGGA
rJMFF020E04+ CCTGTATGTATGTAATGGTGTAACTCCACAAATAGCCGGTTTGGTGTAGTTTTACTAGGA
rJMFF027I17+ CCTGTATGTATGTAATGGTGTAACTCCACAAATAGCCGGTTTGGTGTAGTTTTACTAGGA
rJMFF023A01+ CCTGTATGTATGTAATGGTGTAACTCCACAAATAGCCGGTTTGGTGTAGTTTTACTAGGA
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consensus CCTGTATGTATGTAATGGTGTAACTCCACAAATAGCCGGTTTGGTGTAGTTTTACTAGGA

. : . : . : . : . : . :
rJMFF016D18+ CAAGTTTCNTTCACGCATGAATTCCACTATCNTTTGTACGTCTTCTGGGGCATCAACACC
rJMFF020E04+ CAAGTTTCGTTCACGCATGAATTCCACTATCTTTTGTACGTCTTCTGGGGCATCAACACC
rJMFF027I17+ CAAGTTTCGTTCACGCATGAATTCCACTATCTTTTGTACGTCTTCTGGGGCATCAACACC
rJMFF023A01+ CAANTTTCGTTCACNCATGAATTCCACTATCTTTTGTACGTCTTCTGGGGCATCAACACC
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consensus CAAGTTTCGTTCACGCATGAATTCCACTATCTTTTGTACGTCTTCTGGGGCATCAACACC

. : . : . : . : . : . :
rJMFF016D18+ ATGAGCCTCATGATCCACTTTAATCACCTTCATTCTGTATCCATTCTCGAGGACCTTCAA
rJMFF020E04+ ATGAGCCTCATGATCCACTTTAATCACCTTCATTCTGTATCCATTCTCGAGGACCTTCAA
rJMFF027I17+ ATGAGCCTCATGATCCACTTTAATCACCTTCATTCTGTATCCATTCTCGAGGACCTTCAA
rJMFF023A01+ ATGAGCCTCATGATCCACTTTAATCACCTTCATTCTGTATCCATTCTCGAGGACCTTCAA
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consensus ATGAGCCTCATGATCCACTTTAATCACCTTCATTCTGTATCCATTCTCGAGGACCTTCAA

. : . : . : . : . : . :
rJMFF016D18+ TTGTTCAAGATCTTCTTGTANTTGCNGNGGGGTTGGTTGCAGNTCTGGATATATTTTGAG
rJMFF020E04+ TTGTTCAAGATCTTCTTGTAGTTGCAGTGGGGTTGGTTGCAGTTCTGGATATATTTTGAG
rJMFF027I17+ TTGTTCAAGATCTTCTTGTAGTTGCAGTGGGGTTGGTTGCAGTTCTGGATATATTTTGAG
rJMFF023A01+ TTGTTCAAGATCTTCTTGTA
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consensus TTGTTCAAGATCTTCTTGTAGTTGCAGTGGGGTTGGTTGCAGTTCTGGATATATTTTGAG

. : . : . : . : . : . :
rJMFF016D18+ GAACTTCGTATCATAACTCTGAATTCCA
rJMFF020E04+ GAACTTCGTATCATAACTCTGAATTCCAAGGTGGAGCAAGTAAGGAAAATCAGGATTAAC
rJMFF027I17+ GAACTTCGTATCATAACTCTGAATTCCAAGGTGGAGCAAGTAAGGAAAATCAGGATTAAC
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consensus GAACTTCGTATCATAACTCTGAATTCCAAGGTGGAGCAAGTAAGGAAAATCAGGATTAAC

. : . : . : . : . : . :
rJMFF020E04+ CTTGCCAG
rJMFF027I17+ CTTGCCAGACTTGTTATAAGGGATAAGCCCTCGA
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consensus CTTGCCAGACTTGTTATAAGGGATAAGCCCTCGA