Alignment Contig 6806

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF010P09+ TTCTTCATAATTTAAACACACTAGTATTTATTGGTGAAGAATACAA-AAAAAAGGGGTAA
rJMFF016M06+ AACACACTAGTATTTATTGGTGAAGAATACAAGAAANAAGGGGTAA
rJMSF010L04+ AACACACTAGTATTTATTGGTGAAGAATACAAAAAAAAAGGGGTAA
rJMSF012K07+ AACACACTAGTATTTATTGGTGAAGAATACAA-AAAAAAGGGGTAA
rJMSF011L04+ GGGGTAN
rJMSF031D20+ ACACACTAGTATTTATTGGTGAAGAATACAA-AAAAAAGGGGTAA
rJMSF044N10+ ACACACTAGTATTTATTGGTGAAGAATACAA-AAAAAAGGGGTAA
rJMSF015C01+ GGTGAAGAATACAA-AAAAAAGGGGTAA
____________________________________________________________
consensus TTCTTCATAATTTAAACACACTAGTATTTATTGGTGAAGAATACAA-AAAAAAGGGGTAA

. : . : . : . : . : . :
rJMFF010P09+ AGATACAGG--GAATTCGAACATAATTTTATACTCGAAATCACCATGT-CTGGTAAACAA
rJMFF016M06+ AGATACAGGGGGAATTCNAACATNATTTTATACTCGAAATCACCATGT-CTGGTAANCAA
rJMSF010L04+ AGATACAGGG-AAATTCGAACATAATTTTATACTCGAAATCACCATGT-CTGGTAAACAA
rJMSF012K07+ AGATACAGG--GAATTCGAACATAATTTTATACTCGAAATCACCATGT-CTGGTAAACAA
rJMSF011L04+ AGATACAGG--GANTNCGNACATAATTTTATACTCGAAATCACCATGT-CTGGTAAACAA
rJMSF031D20+ AGATACAGG--GAATTCGAACATAATTTTATACTCGAAATCACCATGTTCTGGTAAACAA
rJMSF044N10+ AGATACAGG--GAATTCGAACATAATTTTATACTCGAAATCACCATGT-CTGGTAAACAA
rJMSF015C01+ AGATACAGG--GAATTCGAACATAATTTTATACTCGAAATCACCATGTTCTGGTAAACAA
____________________________________________________________
consensus AGATACAGG--GAATTCGAACATAATTTTATACTCGAAATCACCATGT-CTGGTAAACAA

. : . : . : . : . : . :
rJMFF010P09+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
rJMFF016M06+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
rJMSF010L04+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
rJMSF012K07+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
rJMSF011L04+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
rJMSF031D20+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCGGT
rJMSF044N10+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
rJMSF015C01+ TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT
____________________________________________________________
consensus TAATCTATGTTGGAAAGTCCGCCTCGATCTGTAAATAGCCGTAAACTGGGTTACAGCAGT

. : . : . : . : . : . :
rJMFF010P09+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
rJMFF016M06+ NCTAAAACAAGGGCTGAANCGCCGNCTCCACCGTTGCAAATGCCACCAACTCCGNATTTT
rJMSF010L04+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
rJMSF012K07+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
rJMSF011L04+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
rJMSF031D20+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
rJMSF044N10+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
rJMSF015C01+ TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT
____________________________________________________________
consensus TCTAAAACAAGGGCTGAAGCGCCGCCTCCACCGTTGCAAATGCCACCAACTCCGTATTTT

. : . : . : . : . : . :
rJMFF010P09+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
rJMFF016M06+ CCGTTCTTCTGCTTCAGGACCCCGANAAGNGTANCCAATATTCGGGCTCCGCTGCATCCA
rJMSF010L04+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
rJMSF012K07+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
rJMSF011L04+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
rJMSF031D20+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
rJMSF044N10+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
rJMSF015C01+ CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA
____________________________________________________________
consensus CCGTTCTTCTGCTTCAGGACCCCGAGAAGTGTAACCAATATTCGGGCTCCGCTGCATCCA

. : . : . : . : . : . :
rJMFF010P09+ AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
rJMFF016M06+ ANAGGGTGACCCANANANACGGCTCCACCATGTACATTTACTTTGTCCGCATTANTCCCC
rJMSF010L04+ AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
rJMSF012K07+ AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
rJMSF011L04+ AGAGGGTGACCCANAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
rJMSF031D20+ AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
rJMSF044N10+ AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
rJMSF015C01+ AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC
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consensus AGAGGGTGACCCAGAGACACGGCTCCACCATGTACATTTACTTTGTCCGCATTAATCCCC

. : . : . : . : . : . :
rJMFF010P09+ AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
rJMFF016M06+ AGTANTTTCTGATTTGCGAGGGCTACAGCCGCANAAGCTTCATTGATTTCGTAATAATCA
rJMSF010L04+ AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
rJMSF012K07+ AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
rJMSF011L04+ AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
rJMSF031D20+ AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
rJMSF044N10+ AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
rJMSF015C01+ AGTAGTTT-TGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA
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consensus AGTAGTTTCTGATTTGCGAGGGCTACAGCCGCAAAAGCTTCATTGATTTCGTAATAATCA

. : . : . : . : . : . :
rJMFF010P09+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
rJMFF016M06+ ACTTGANAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAANAGCAGGAGAA
rJMSF010L04+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
rJMSF012K07+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
rJMSF011L04+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
rJMSF031D20+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
rJMSF044N10+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
rJMSF015C01+ ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA
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consensus ACTTGAGAGGCTTCTAGACCAGCATTTTTTATTGCTTTTGGAATTGCAAGAGCAGGAGAA

. : . : . : . : . : . :
rJMFF010P09+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
rJMFF016M06+ GTTGTAAATAATTCTGGTGCCTGAGCAGNATCTGCATATCCCGTGATCTTTGCAATCACT
rJMSF010L04+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
rJMSF012K07+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
rJMSF011L04+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
rJMSF031D20+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
rJMSF044N10+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
rJMSF015C01+ GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT
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consensus GTTGTAAATAATTCTGGTGCCTGAGCAGCATCTGCATATCCCGTGATCTTTGCAATCACT

. : . : . : . : . : . :
rJMFF010P09+ GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
rJMFF016M06+ GTTAAACCAAGCTCAATGGCTCTCTTTCCANTCACCAATACCAAAGCAGCAGCACCATCA
rJMSF010L04+ GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
rJMSF012K07+ GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
rJMSF011L04+ GTTAAACCAAGCTCANNGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
rJMSF031D20+ GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
rJMSF044N10+ GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
rJMSF015C01+ GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA
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consensus GTTAAACCAAGCTCAATGGCTCTCTTTCCACTCACCAATACCAAAGCAGCAGCACCATCA

. : . : . : . : . : . :
rJMFF010P09+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA
rJMFF016M06+ CTTATGCTGGAAGANTTACCAGCANTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA
rJMSF010L04+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA
rJMSF012K07+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA
rJMSF011L04+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCNTTAAAACTTGG
rJMSF031D20+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA
rJMSF044N10+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA
rJMSF015C01+ CTTATGCTGGAAGAGTTACCAGCAGTCACGGA-CCTCCATCTTCCTTAAAACTTGGTCGA
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consensus CTTATGCTGGAAGAGTTACCAGCAGTCACGGAACCTCCATCTTCCTTAAAACTTGGTCGA

. : . : . : . : . : . :
rJMFF010P09+ AGTTTCCTCAGCTTTGAAGCATCAAACTTCCCTAGGCCTTCATCCTTATCAACAAT
rJMSF010L04+ AGTTTCCTCAGCTTTGAAGCATCAAACT
rJMSF012K07+ AGTTTCCTCAGCTTTGAAGCATCAAACT
rJMSF031D20+ AGTTTCCTCAGCTTTGAAGCATCAAACT
rJMSF044N10+ AGTTTCCTCAGCTTTGAAGCATCAAACTTCCCTAGGCCTTCATCCTTATCAACAAT
rJMSF015C01+ AGTTTCCTCAGCTTTGAAGCATCAAACTGCAAAGGCAGATAAGAATATATAGTTAAAGGA
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consensus AGTTTCCTCAGCTTTGAAGCATCAAACTTCCCTAGGCCTTCATCCTTATCAACAATAGGA

. : . : . : . : . : . :
rJMSF015C01+ AATAAGGAAATAACANCAAACATCATTTTAAGAACTGCTTTGTAAATTTTCACATATTTG
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consensus AATAAGGAAATAACANCAAACATCATTTTAAGAACTGCTTTGTAAATTTTCACATATTTG

. : . : . : . : . : . :
rJMSF015C01+ ATCCATTTTTG
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consensus ATCCATTTTTG