Alignment Contig 6728

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF049A20+ TGGAAAAAAGCACAGAGCATTTATGAACTTCGTTTTGCCGGAAGTACGGATCTCTGTAGT
JMSF002O12+ CTTCGTTTTGCCGGAAGTACGGATCTCTGTAGT
JMSF017J01+ CTTCGTTTTGCCGGAAGTACGGATCTCTGTAGT
JMSF046E03+ GCCGGAAGTACGGATCTCTGTAGT
JMSF032K14+ GTAGT
JMFF039H02+ AGT
JMFF045E17+ AGT
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consensus TGGAAAAAAGCACAGAGCATTTATGAACTTCGTTTTGCCGGAAGTACGGATCTCTGTAGT

. : . : . : . : . : . :
JMSF049A20+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
JMSF002O12+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
JMSF017J01+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
JMSF046E03+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
JMSF032K14+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
JMFF039H02+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
JMFF045E17+ CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC
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consensus CTTTATCGTGTCGTGATCCACCGAGCAAAGGCAAATCGGGTCTTCATCCTCATATATACC

. : . : . : . : . : . :
JMSF049A20+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
JMSF002O12+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
JMSF017J01+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
JMSF046E03+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
JMSF032K14+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
JMFF039H02+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
JMFF045E17+ TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG
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consensus TCATCTGCTCTTCGCGATCTACATCTCTTGCGAACTTAGATCCAGGCCATCGGAAGTACG

. : . : . : . : . : . :
JMSF049A20+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
JMSF002O12+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
JMSF017J01+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
JMSF046E03+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
JMSF032K14+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
JMFF039H02+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
JMFF045E17+ GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC
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consensus GCGACAGTGATGTTGCACGCCGTCGGAATACTCTCTTTCCTCGCCGCCGTCCTCGTCGTC

. : . : . : . : . : . :
JMSF049A20+ TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT
JMSF002O12+ TCGCCAGTGTTGGCTTCCGAGTCCGATCA
JMSF017J01+ TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT
JMSF046E03+ TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT
JMSF032K14+ TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT
JMFF039H02+ TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT
JMFF045E17+ TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT
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consensus TCGCCAGTGTTGGCTTCCGAGTCCGATCACAAGTATAAGCCTGATGACCCTGTTACCCTT

. : . : . : . : . : . :
JMSF049A20+ TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT
JMSF017J01+ TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT
JMSF046E03+ TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT
JMSF032K14+ TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT
JMFF039H02+ TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT
JMFF045E17+ TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT
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consensus TGGGTAAATAAAGTTGGACCTTACTATAACCCACAAGAGACCTACAACTATTACAGCCTT

. : . : . : . : . : . :
JMSF049A20+ CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA
JMSF017J01+ CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA
JMSF046E03+ CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA
JMSF032K14+ CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA
JMFF039H02+ CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA
JMFF045E17+ CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA
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consensus CCATTTTGTCGTGCATCTGAAAATGCTCCTCACAGATGGGGTGGCCTTGGTGAAGTTTTA

. : . : . : . : . : . :
JMSF049A20+ GGTGGAAATGAACTTATAGATAGCCAGATCAACATAAAGTTTCAAAAAAATGTGGACAAG
JMSF017J01+ GGTGGAAATGAACTTATAGATAGCCAGATCAACATAA
JMSF046E03+ GGTGGAAATGAACTTATAGATAGCCAGATCAACATAAAGTTTCAAAAAAATGTGGACAAG
JMSF032K14+ GGTGGAAATGAACTTATAGATAGCCAGATCAACATAAAGTTTCAAAAAAATGTGGACAAG
JMFF039H02+ GGTGGAAATGAACTTATAGATAGCCAGATCAACATAAAGTTTCAAAAAAATGTGGACAAG
JMFF045E17+ GGTGGAAATGAACTTATAGATAGCCAGATCAACATAAAGTTTCAAAAAAATGTGGACAAG
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consensus GGTGGAAATGAACTTATAGATAGCCAGATCAACATAAAGTTTCAAAAAAATGTGGACAAG

. : . : . : . : . : . :
JMSF049A20+ GGCCATATTTGTCAACTTGAACTAGATGAGACGAAGGTCAGGAAATTCAAGGATGCTATT
JMSF046E03+ GGCCATATTTGTCAACTTGAACTAGATGAGACGAAGGTCAGGAAATTCAAGGATGCTATT
JMSF032K14+ GGCCATATTTGTCAACTTGAACTAGATGAGACGAAGGTCAGGAAATTCAAGGATGCTATT
JMFF039H02+ GGCCATATTTGTCAACTTGAACTAGATGAGACGAAGGTCAGGAAATTCAAGGATGCTATT
JMFF045E17+ GGCCATATTTGTCAACTTGAACTAGATGAGACGAAGGTCAGGAAATTCAAGGATGCTATT
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consensus GGCCATATTTGTCAACTTGAACTAGATGAGACGAAGGTCAGGAAATTCAAGGATGCTATT

. : . : . : . : . : . :
JMSF049A20+ GAAAACAGTTATTGGTTTGAATTCTTCATGGATGATTTGCCTTTATGGGGTTTTGTTGGG
JMSF046E03+ GAAAACAGTTATTGGTTTGAATTCTTCATGGATGATTTGCCTTTATGGGGTTTTGTTGGG
JMSF032K14+ GAAAACAGTTATTGGTTTGAATTCTTCATGGATGATTTGCCTTTATGGGGTTTTGTTGGG
JMFF039H02+ GAAAACAGTTATTGGTTTGAATTCTTCATGGATGATTTG
JMFF045E17+ GAAAACAGTTATTGGTTTGAATTCTTCATGGATGATTTGCCTTTATGGGGTTTTGTTGGG
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consensus GAAAACAGTTATTGGTTTGAATTCTTCATGGATGATTTGCCTTTATGGGGTTTTGTTGGG

. : . : . : . : . : . :
JMSF049A20+ GACCTGGACAGGAATAGTGATAACAAACCTGTTATTTTCACCCATAAAAGTATAACAGTT
JMSF046E03+ GACCTGGACAGGAATAGTGATAACAAACCTGTTATTTTCACCCATAAAAGTATAACAGTT
JMSF032K14+ GACCTGGACAGGAATAGTGATAACAAACCTGTTATTTTCACCCATAAAAGTATAACAGTT
JMFF045E17+ GACCTGGACAGGAATAGTGATAACAAACCTGTTATTTTCACCCATAANAGTATAACAGTT
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consensus GACCTGGACAGGAATAGTGATAACAAACCTGTTATTTTCACCCATAAAAGTATAACAGTT

. : . : . : . : . : . :
JMSF049A20+ AAATATAATAAAGATCAGATCATTCATGTCAATCTCAGT
JMSF046E03+ AAATATAATAAAGATCAGATCATTCATGTCAATCTCAGT
JMSF032K14+ AAATATAATAAAGATCAGATCATTCATGTCAATCTCAGTCAAGAGAGCCCAAAACCTTTA
JMFF045E17+ AAATATAATNAAGATCAGATCATTC
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consensus AAATATAATAAAGATCAGATCATTCATGTCAATCTCAGTCAAGAGAGCCCAAAACCTTTA