Alignment Contig 6647

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF039K02- TNTNTNTTACCAAGTAAATTTAATGGGATTGACATATCACACAAAGATCTCTTACGCAAA
rJMSF006H18+ GATCTCTTACGCAAA
rJMSF043P13+ GATCTCTTACGCAAA
rJMSF039K02+ GATCTCTTACGCAAA
rJMFF043O07+ GCAAA
____________________________________________________________
consensus TNTNTNTTACCAAGTAAATTTAATGGGATTGACATATCACACAAAGATCTCTTACGCAAA

. : . : . : . : . : . :
JMSF039K02- ACCTTACATTCAAAAAGTTCCAAAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMSF006H18+ AGCTTACATTCGAAAAGTTCCAAAATTGCTGGGCACAACCCTAACATTGAGAAACCATTG
rJMSF043P13+ ACCTTACATTCAAAAAGTTCCAAAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMSF005C21+ CCATT
rJMSF039K02+ ACCTTACATTCAAAAAGTTCCAAAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMFF043O07+ ACCTTACATTCAAAAAGTTCCAAAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMSF044H08+ AAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMFF031H09+ AAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMFF030O10+ AATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMFF025A23+ AAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
rJMSF046M09+ AAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-
____________________________________________________________
consensus ACCTTACATTCAAAAAGTTCCAAAATTTCTTGGCACAACC-TAACATTGAAAAACCATT-

. : . : . : . : . : . :
JMSF039K02- ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF006H18+ ATTACNATATATTCTGAATCCAATGGCTCTTCNAATTGATGGGTAAATCNTNGTGCNGGA
rJMSF043P13+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF004N05+ GGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF005C21+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF039K02+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMFF043O07+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF044H08+ ATTACAATATATTCTGAATCCGATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMFF031H09+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMFF030O10+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMFF025A23+ ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF046M09+ ATTACAATATTTTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
rJMSF016P15+ ATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA
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consensus ATTACAATATATTCTGAATCCAATGGCTCTTCTAATTGATGGGTAAATCATCATGCTGGA

. : . : . : . : . : . :
JMSF039K02- CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMSF006H18+ CAACGATTATTATNAGANTTGTTAAGAGTCA
rJMSF043P13+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMSF004N05+ CNACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMSF005C21+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGANACAAAGTAACTC
rJMSF039K02+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMFF043O07+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMSF044H08+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMFF031H09+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMFF030O10+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMFF025A23+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMSF046M09+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
rJMSF016P15+ CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC
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consensus CAACTATTATTATAAGATTTGTTAAAAGTCATTGGATCAAAGAGTGAAACAAAGTAACTC

. : . : . : . : . : . :
JMSF039K02- ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMSF043P13+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMSF004N05+ ATCAAAATTGCTATGANAATGTACTTCCAGTCTTATTTATCNAGCTGACATTGTGATNTG
rJMSF005C21+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMSF039K02+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMFF043O07+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMSF044H08+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMFF031H09+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMFF030O10+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMFF025A23+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMSF046M09+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
rJMSF016P15+ ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG
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consensus ATCAAAATTGCTATGAAAATGTACTTCCAGTCTTATTTATCTAGCTGACATTGTAATATG

. : . : . : . : . : . :
JMSF039K02- AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMSF043P13+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMSF004N05+ AATCAATGATGGCATCTGCANGATATTCGCACNTCGCTGCANATAAGCCAGCCAAGGANA
rJMSF005C21+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMSF039K02+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMFF043O07+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMSF044H08+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMFF031H09+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMFF030O10+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMFF025A23+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMSF046M09+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
rJMSF016P15+ AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA
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consensus AATCAATGATGGCATCTGCAAGATATTCGCACTTCGCTGCAGATAAGCCAGCCAAGGATA

. : . : . : . : . : . :
JMSF039K02- TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMSF043P13+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMSF004N05+ TTCTTCCATCTTTGGNCATGTATATGTGCCACTTATTCGACATGGTTTCGCTCTGAGNTT
rJMSF005C21+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMSF039K02+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMFF043O07+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMSF044H08+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMFF031H09+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMFF030O10+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMFF025A23+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMSF046M09+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
rJMSF016P15+ TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT
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consensus TTCTTCCATCTTTGGTCATGTATATATGCCACTTATTCGACATGTTTTCGCTCTGAGCTT

. : . : . : . : . : . :
JMSF039K02- TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMSF043P13+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMSF004N05+ TATTCAGG
rJMSF005C21+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMSF039K02+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMFF043O07+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMSF044H08+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMFF031H09+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMFF030O10+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMFF025A23+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMSF046M09+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
rJMSF016P15+ TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC
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consensus TATTCAGGCCGGTAAAGGAAAACATGCCAATCTGCTTCAGAATAAATGTCCAGTCCTTCC

. : . : . : . : . : . :
JMSF039K02- CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCAC
rJMSF043P13+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMSF005C21+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGNTTTTGCCTCACGCTCTTTACCCTCC
rJMSF039K02+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCAC
rJMFF043O07+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMSF044H08+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMFF031H09+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMFF030O10+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMFF025A23+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMSF046M09+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
rJMSF016P15+ CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC
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consensus CACTCTTGTCCTTCAAAGACAGGCTGTCATATAGTTTTTGCCTCACGCTCTTTATCCTCC

. : . : . : . : . : . :
rJMSF043P13+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMSF005C21+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAG
rJMFF043O07+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMSF044H08+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMFF031H09+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMFF030O10+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMFF025A23+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMSF046M09+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
rJMSF016P15+ CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT
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consensus CTGCCATCATTTCCATCTCTTGTTTCCATTCATTGAAGAGCTCGGGGTTTCCTACGACAT

. : . : . : . : . : . :
rJMSF043P13+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCCTC
rJMFF043O07+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
rJMSF044H08+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
rJMFF031H09+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
rJMFF030O10+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
rJMFF025A23+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
rJMSF046M09+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
rJMSF016P15+ TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT
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consensus TGGCAACAATCCTAGCTCCATGTATGGGAGGATTTGAGTACATTGGCCGTGCCAGCCTCT

. : . : . : . : . : . :
rJMSF043P13+ TTCAGTTGGCTTTTTCACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
rJMFF043O07+ TC
rJMSF044H08+ T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
rJMFF031H09+ T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
rJMFF030O10+ T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
rJMFF025A23+ T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
rJMSF046M09+ T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
rJMSF016P15+ T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC
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consensus T-CAGTTGGCTTTT-CACCCTTGCTGCTGCATCCGCTGATGAGCAAACAACATTGATAGC

. : . : . : . : . : . :
rJMSF043P13+ TCCA
rJMSF044H08+ TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC
rJMFF031H09+ TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC
rJMFF030O10+ TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC
rJMFF025A23+ TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC
rJMSF046M09+ TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC
rJMSF016P15+ TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC
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consensus TCCAATCCTTTCAGCATAAAGACCCAGATTCTTACTGTACGACTGAGCAACAAGCAGCTC

. : . : . : . : . : . :
rJMSF044H08+ CAACCCACGTGAAGCAAACATTCTCACAGATGATGCATCTGCATCAAGGCTACCACTCGC
rJMFF031H09+ CAACCCACGTGAAGCAAACATTCTCACAGATGATGCATCTGCATCAAGGCTACCACTCGC
rJMFF025A23+ CAACCCACGTGAAGCAAACATTCTCACAGATGATGCATCTGCATCAANGCTACCACTC
rJMSF046M09+ CNACCCACGTGAAGCAAACATTCTCACAGATGATGCATCTGCATCANGGCTACCACTCGC
rJMSF016P15+ CAACCCACGTGAAGCAAACATTCTCACAGATGATGCATCTGCATCAAGGCTACCACTCGC
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consensus CAACCCACGTGAAGCAAACATTCTCACAGATGATGCATCTGCATCAAGGCTACCACTCGC

. : . : . : . : . : . :
rJMSF044H08+ AAA-TCCCTGATAGGCAACATCAAAAAA
rJMFF031H09+ AAA
rJMSF046M09+ AAAATCCCTGATAGGCAACATCAAAAAA
rJMSF016P15+ AAA-TCCCTGATAGGCAACATCAAAAAACGGAATGTGGTTCTTCTCTNG
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consensus AAA-TCCCTGATAGGCAACATCAAAAAACGGAATGTGGTTCTTCTCTNG