Alignment Contig 6524

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF023P17+ GAATTCGCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT
JMSF007G12+ TTCGCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT
JMFF043D10+ GCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT
JMSF051D11+ TTCGCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT
JMFF005J22+ TTCGCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT
JMFF012D18+ CTCTTTCTTTCAT
JMFF042B15+ GCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT
JMFF002K08+ AT
JMFF011F21+ GCAAAGCCTCTTTCTTTCAT
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consensus GAATTCGCCGGTCTTCAAGCCCCCAAAAGGCAACCAACTCGCAAAGCCTCTTTCTTTCAT

. : . : . : . : . : . :
JMSF023P17+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMSF007G12+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFF043D10+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMSF051D11+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFF005J22+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFF012D18+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFS125H09+ CAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFF042B15+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFF002K08+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFF011F21+ CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC
JMFS076H11+ GACTGACTCTCCGCATCTTCCAGAGCTTTCTC
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consensus CTCCTCCGCCGTTCATCCCAAACCCTCGGACTGACTCTCCGCATCTTCCAGAGCTTTCTC

. : . : . : . : . : . :
JMSF023P17+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCTCGCC
JMSF007G12+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCTCGCC
JMFF043D10+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMSF051D11+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCTCGCC
JMFF005J22+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMFF012D18+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMFS125H09+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMFF042B15+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMFF002K08+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMFF011F21+ CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC
JMFS076H11+ CACCGCCTCACTCATCAATAGATCGGCGGAATCATGTATAGAACCGCGGCTTATAGCGCC
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consensus CACCGCCTCACTCATCAATAGATCGCCGGAATCATGTATAGAACCGCGGCTTCTCGCGCC

. : . : . : . : . : . :
JMSF023P17+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMSF007G12+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFF043D10+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMSF051D11+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFF005J22+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFF012D18+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFS125H09+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFF042B15+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFF002K08+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFF011F21+ AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
JMFS076H11+ AGAGCCCTCAAGGGCCGGGCCAGCATTAGGGCATTGACCAGATTTGCAAGTTCGACTGCT
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consensus AGAGCCCTCAAGGGCCGGGCCAGCAATAGGGCATTGACCAGATTTGCAAGTTCGACTGCT

. : . : . : . : . : . :
JMSF023P17+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMSF007G12+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGG
JMFF043D10+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMSF051D11+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFF005J22+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFF012D18+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFS125H09+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFF042B15+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFF002K08+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFF011F21+ GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT
JMFS076H11+ GTTGCAACAAATTCATCCTGTGGTGGCCTATTTAGCTGGATAACTGGTGAACGGTCTAGT
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consensus GTTGCAACAAATTCATCCTCTGGTGGCCTATTTAGCTGGTTAACTGGTGAACGGTCTAGT

. : . : . : . : . : . :
JMSF023P17+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFF043D10+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMSF051D11+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFF005J22+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFF012D18+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFS125H09+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFF042B15+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFF002K08+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFF011F21+ GCCCTCCCTCCTCTAGACTTTCCTCTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT
JMFS076H11+ GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGGTACTCTGCCACCTCCATTACCCGAT
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consensus GCCCTCCCTCCTCTAGACTTTCCACTAAAGGGTGTTACTCTGCCACCTCCATTACCCGAT

. : . : . : . : . : . :
JMSF023P17+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFF043D10+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMSF051D11+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFF005J22+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFF012D18+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFS125H09+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFF042B15+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFF002K08+ CATGTTGAACCTGGGA
JMFF011F21+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
JMFS076H11+ CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA
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consensus CATGTTGAACCTGGGAGTACCAAAATTACAACCTTGCCAAATGGTCTTAAAATAGCATCA

. : . : . : . : . : . :
JMSF023P17+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMFF043D10+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMSF051D11+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMFF005J22+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMFF012D18+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMFS125H09+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMFF042B15+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
JMFF011F21+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGA
JMFS076H11+ GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT
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consensus GAAACATCAGCGAGCCCGGCTGCCTCAGTTGGATTATATGTTGACAGTGGATCAATCTAT

. : . : . : . : . : . :
JMSF023P17+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMFF043D10+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMSF051D11+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMFF005J22+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMFF012D18+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMFS125H09+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMFF042B15+ GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA
JMFS076H11+ GAAAAACCAGCATTATTTGGGGCCTGACATATATTGGAACGAATGGCTTTCAAAAGCACA
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consensus GAAAAACCAGCATCATTTGGGGCCTCACATCTCTTGGAACGAATGGCTTTCAAAAGCACA

. : . : . : . : . : . :
JMSF023P17+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
JMFF043D10+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
JMSF051D11+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
JMFF005J22+ TTGAATCGCAGCCACTTGCGTGTTGTC
JMFF012D18+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
JMFS125H09+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
JMFF042B15+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
JMFS076H11+ TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA
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consensus TTGAATCGCAGCCACTTGCGTGTTGTCCGAGAAGTTGAAGCTATTGGTGGTAGTGTTCAA

. : . : . : . : . : . :
JMSF023P17+ GCTGCTGCCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAA
JMFF043D10+ GCTGCTGCCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAA
JMSF051D11+ GCTGCTGCCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAAACATATG
JMFF012D18+ GCTGCTGCCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAAACATATG
JMFS125H09+ GCTGCTGCCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAAACATAT
JMFF042B15+ GCTGCTGCCTNCAGAAGACAAATGACTTATACTTATGATGCTTTGAAAACATATG
JMFS076H11+ GCTGCTGTCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAA-CATATGTTCCT
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consensus GCTGCTGCCTCAAGAGAACAAATGACTTATACTTATGATGCTTTGAAAACATATGTTCCT

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JMFS076H11+ CACATGGTGGAGCTCCTTGTA
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consensus CACATGGTGGAGCTCCTTGTA