Alignment Contig 6473

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF017F22+ GGCCAGATCACAAGAATCAAAGTTATGGTATAGCTACAA-TTAAGCTTCCATCAATCCTC
JMFF040E02+ AGATCACAAGAATCAAAGTTATGGTATAGCTACAA-TTAAGCTTCCATCAATCCTC
JMSF041I03+ AGATCGCAAGAATCAAAGTTATGGTATAGCTACAA-TTAAGCTTCCATCAATCCTC
JMFF042M01+ AGATCACAAGAATCAAAGTTATGGTATAGCTACAANTTAAGCTTCCATCAATCCTC
JMSF028J10+ TGGTATAGCTACAA-TTAAGCTTCCATCAATCCTC
____________________________________________________________
consensus GGCCAGATCACAAGAATCAAAGTTATGGTATAGCTACAA-TTAAGCTTCCATCAATCCTC

. : . : . : . : . : . :
JMSF017F22+ TCAGAATATATAGAGAGCTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGT
JMFF040E02+ TCAGAATATATAGAGAACTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGT
JMSF041I03+ TCAGAATATATAGAGAACTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGT
JMFF042M01+ TCAGAATATATAGAGAACTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGT
JMSF028J10+ TCAGAATATATAGAGAACTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGT
____________________________________________________________
consensus TCAGAATATATAGAGAACTCTAGTTCATAAGGGGATCAAGATTTATGCTATGGAGGCTGT

. : . : . : . : . : . :
JMSF017F22+ CAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA
JMFF040E02+ CAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA
JMSF041I03+ CAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA
JMFS103F06+ TGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA
JMFF042M01+ CAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA
JMSF028J10+ CAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA
____________________________________________________________
consensus CAATGCACTGAGATTGACTCCACTTTCTGTTCTTTCTGAGAGAAGAAATGAACCCAGAAA

. : . : . : . : . : . :
JMSF017F22+ AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTC
JMFF040E02+ AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGA
JMSF041I03+ AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGA
JMFS103F06+ AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGA
JMFF042M01+ AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGA
JMSF028J10+ AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGA
____________________________________________________________
consensus AATCCCATTGCTACCTTCTTCTTTACCATTCAAGAGCCTCTCTTCTTCAAACTCCATGGA

. : . : . : . : . : . :
JMFF040E02+ GGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGG
JMSF041I03+ GGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGG
JMFS103F06+ GGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGG
JMFF042M01+ GGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGG
JMSF028J10+ GGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGG
____________________________________________________________
consensus GGCTATATCAAGAAATGTTAAAGGGGGGCTAGTGCTTCTATCTTCTGTTATGAGCTCGGG

. : . : . : . : . : . :
JMFF040E02+ CTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTT
JMSF041I03+ CTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTT
JMFS103F06+ CTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTT
JMFF042M01+ CTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTT
JMSF028J10+ CTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTT
____________________________________________________________
consensus CTTAGCTAAAGCGCTAACATATGAGGAAGCCCTCCAGCAGACCAGTGTCAGCACTGACTT

. : . : . : . : . : . :
JMFF040E02+ CGATCCAAGCGGGGTTATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGT
JMSF041I03+ CGATCCAAGCGGGGTTATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGT
JMFS103F06+ CGATCCAAGCGGGGTTATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGT
JMFF042M01+ CGATCCAAGCGGGGTTATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGT
JMSF028J10+ CGATCCAAGCGGGGTCATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGT
____________________________________________________________
consensus CGATCCAAGCGGGGTTATGGAAACTGTGACCACTTTTGCTGGTGACAACCCTGTAATTGT

. : . : . : . : . : . :
JMFF040E02+ AGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCC
JMSF041I03+ AGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCC
JMFS103F06+ AGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCC
JMFF042M01+ AGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCC
JMSF028J10+ AGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCC
____________________________________________________________
consensus AGCTGGCGGTGTGGCAATTTTGGCAGTGCCCCTTCTTGTGTCTCAGTTGTTGAGCAAGCC

. : . : . : . : . : . :
JMFF040E02+ TAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAA
JMSF041I03+ TAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAA
JMFS103F06+ TAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAA
JMFF042M01+ TAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAA
JMSF028J10+ TAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAA
____________________________________________________________
consensus TAAGCCATGGGGTGTTGAGTCTGCAAAGACTGCTTATGCCAAACTGGCTGATGATGCCAA

. : . : . : . : . : . :
JMFF040E02+ TGCACAGTT
JMSF041I03+ TGCACAGTTGTTGGATATAAGGCCGGCTCGCGAGCTGAAGGAGGTGGGGAGCCCGGATAT
JMFS103F06+ TGCACAGTTGTTGGATATAAGGCCGGCTCGCGAGCTGAAGGAGGTGGGGAGCCCGGATAT
JMFF042M01+ TGCACAGTTGTTGGATATAAGGCCGGCTCGCGAGCTGAAGGAGGTGGGGAGCCCGGATAT
JMSF028J10+ TGCACAGTTGTTGGATATAAGGCCGGCTCGCGAGCTGAAGGAGGTGGGGAGCCCGGATAT
____________________________________________________________
consensus TGCACAGTTGTTGGATATAAGGCCGGCTCGCGAGCTGAAGGAGGTGGGGAGCCCGGATAT

. : . : . : . : . : . :
JMSF041I03+ CCGGGGCTTGAAGAAGAAGCCAGTTACTGTGAGCTACAATGGCGAGGACAAGCCCGGGTT
JMFS103F06+ CCGGGGCTTGAAGAAGAAGCCAGTTACTGTGAGCTACAATGGCGAGGACAAGCCCGGGTT
JMFF042M01+ CCGGGGCTTGAAGAAGAAGCCAGTTACTGTGAGCTACAATGGCGAGGACAAGCCCGGGTT
JMSF028J10+ CCGGGGCTTGAAGAAGAAGCCAGTTACTGTGAGCTACAATGGCGAGGACAAGCCCGGGTT
____________________________________________________________
consensus CCGGGGCTTGAAGAAGAAGCCAGTTACTGTGAGCTACAATGGCGAGGACAAGCCCGGGTT

. : . : . : . : . : . :
JMSF041I03+ CTTGAAGAAGCTGTCTTTGAAGTTCAAGGAGCCAGAGAACACCACATTATTCATTCTAGA
JMFS103F06+ CTTGAAGAAGCTGTCTTTGAAGTTCAAGGA
JMFF042M01+ CT
JMSF028J10+ CTTGAAGAAGCTGTCTTTGAAGTTCAAGGA
____________________________________________________________
consensus CTTGAAGAAGCTGTCTTTGAAGTTCAAGGAGCCAGAGAACACCACATTATTCATTCTAGA

. : . : . : . : . : . :
JMSF041I03+ CAAATTTGATGGTAGCTCGGAACTGGTTGCTGAGCTAGTTACAGAAAATGGCTTTAAAGC
____________________________________________________________
consensus CAAATTTGATGGTAGCTCGGAACTGGTTGCTGAGCTAGTTACAGAAAATGGCTTTAAAGC

. : . : . : . : . : . :
JMSF041I03+ TGCTTATGCAATTAAAG
____________________________________________________________
consensus TGCTTATGCAATTAAAG