Alignment Contig 6447

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF014A03+ GAAGTAAAAAAAAAGGTGGATTGTTATCCATTTTCACTCCTAGCGAGTAGCGTCTATGTG
JMSF049P23+ TTTTCACTCCTAGCGAGTAGCGTCTATGTG
____________________________________________________________
consensus GAAGTAAAAAAAAAGGTGGATTGTTATCCATTTTCACTCCTAGCGAGTAGCGTCTATGTG

. : . : . : . : . : . :
JMSF014A03+ TGGTCTGCATATACTAATCTCCTTGCCGAGAGCTTCCGCCGGTGATGGATAGTATGGTGG
JMSF049P23+ TGGTCTGCATATACTAATCTCCTTGCCGAGAGCTTCCGCCGGTGATGGATAGTATGGTGG
JMSF010A05+ GGTCTGCATATACTAATCTCCTTGCCGAGAGCTTCCGCCGGTGATGGATAGTATGGTGG
JMFF048M09+ GATGGATAGTATGGTGG
____________________________________________________________
consensus TGGTCTGCATATACTAATCTCCTTGCCGAGAGCTTCCGCCGGTGATGGATAGTATGGTGG

. : . : . : . : . : . :
JMSF014A03+ TGCACAGTTTAGCACCGCCGCATGTGCGGCCGCCGGTCTATGACTTCAGAAGAGGCCCTT
JMSF049P23+ TGCACAGTTTAGCACCGCCGCATGTGCGGCCGCCGGTCTATGACTTCAGAAGAGGCCCTT
JMSF010A05+ TGCACAGTTTAGCACCGCCGCATGTGCGGCCGCCGGTCTATGACTTCAGAAGAGGCCCTT
JMFF048M09+ TGCACAGTTTAGCACCGCCGCATGTGCGGCCGCCGGTCTATGACTTCAGAAGAGGCCCTT
____________________________________________________________
consensus TGCACAGTTTAGCACCGCCGCATGTGCGGCCGCCGGTCTATGACTTCAGAAGAGGCCCTT

. : . : . : . : . : . :
JMSF014A03+ TCGCTAAAACTACAAACGTAAAAACATCTTCCAACAGCGTTATACAATTGCATCATTCCC
JMSF049P23+ TCGCTAAAACTACAAACGTAAAAACATCTTCCAACAGCGTTATACAATTGCATCATTCCC
JMSF010A05+ TCGCTAAAACTACAAACGTAAAAACATCTTCCAACAGCGTTATACAATTGCATCATTCCC
JMFF048M09+ TCGCTAAAACTACAAACGTAAAAACATCTTCCAACAGCGTTAGACAATTGCATCATTCCC
____________________________________________________________
consensus TCGCTAAAACTACAAACGTAAAAACATCTTCCAACAGCGTTATACAATTGCATCATTCCC

. : . : . : . : . : . :
JMSF014A03+ AATTTCACTTCAATTCACAGAAACCACTATTCATTGGTCCCAGCAACGATTCC
JMSF049P23+ AATTTCACTTCAATTCACAGAAACCACTATTCATTGGTCCCAGCAACGATTCCGGTTGTT
JMSF010A05+ AATTTCACTTCAATTCACAGAAACCACTATTCATTGGTCCCAGCAACGATTCCGGTTGTT
JMFF048M09+ AATTTCACTTCAATTCACAGAAACCACTATTCATTGGTCCCAGCAACGATTCCGGTTGTT
____________________________________________________________
consensus AATTTCACTTCAATTCACAGAAACCACTATTCATTGGTCCCAGCAACGATTCCGGTTGTT

. : . : . : . : . : . :
JMSF049P23+ CTTCCAGTTCCGCGCTCTATTCCAATGTTTCTTCTCCAACTGCTCGTGCGACACCTGAGG
JMSF010A05+ CTTCCAGTTCCGCGCTCTATTC
JMFF048M09+ CTTCCAGTTCCGCGCTCTATTCCAATGTTTCTTCTCCAACTGCTCGTGCGACACCTGAGG
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consensus CTTCCAGTTCCGCGCTCTATTCCAATGTTTCTTCTCCAACTGCTCGTGCGACACCTGAGG

. : . : . : . : . : . :
JMSF049P23+ TGGATGCAGTCAGCAGCAGTGAAACAGGGACAAGGGAATGGGCTATGCAAGATTTCTATA
JMFF048M09+ TGGATGCAGTCAGCAGCAGTGAAACAGGGACAAGGGAATGGGCTATGCAAGATTTCTATA
____________________________________________________________
consensus TGGATGCAGTCAGCAGCAGTGAAACAGGGACAAGGGAATGGGCTATGCAAGATTTCTATA

. : . : . : . : . : . :
JMSF049P23+ TTTTGAGAAAGGATGTCGAGGTTGTCTCACAACGAGTCGAAGAAATTAGGGCTGCTGCGG
JMFF048M09+ TTTTGAGAAAGGATGTCGAGGTTGTCTCACAACGAGTCGAAGAAATTAGGGCTGCTGCGG
____________________________________________________________
consensus TTTTGAGAAAGGATGTCGAGGTTGTCTCACAACGAGTCGAAGAAATTAGGGCTGCTGCGG

. : . : . : . : . : . :
JMSF049P23+ GGCTGCAGCAACTGGAAGAAGACATTGCAGCTCTAGAAGCAGCAGCAGCAGATACCGCTC
JMFF048M09+ GGCTGCAGCAACTGGAAGAAGACATTGCAGCTCTAGAAGCAGCAGCAGCAGATACCGCTC
____________________________________________________________
consensus GGCTGCAGCAACTGGAAGAAGACATTGCAGCTCTAGAAGCAGCAGCAGCAGATACCGCTC

. : . : . : . : . : . :
JMSF049P23+ TCTGGGACGATCGTGCTAGAGCTCAACAGACACTTCAGGGTTTGACTGATGCCAAAGAAA
JMFF048M09+ TCTGGGACGATCGTGCTAGAGCTCAACAGACACTTCAGGGTTTGACTGATGCCAAAGAAA
____________________________________________________________
consensus TCTGGGACGATCGTGCTAGAGCTCAACAGACACTTCAGGGTTTGACTGATGCCAAAGAAA

. : . : . : . : . : . :
JMSF049P23+ AATTAAAGCTTCTCAATGACTTCATGACACAGGTTGGTGATGCAGAAACAATAATTAACC
JMFF048M09+ AATTAAAGCTTCTCAATGACTTCATGACACAGGTTGGTGATGCAGAAACAATAATTAACC
____________________________________________________________
consensus AATTAAAGCTTCTCAATGACTTCATGACACAGGTTGGTGATGCAGAAACAATAATTAACC

. : . : . : . : . : . :
JMSF049P23+ TTACTGAGGAGATGGACTCCATTGATACAGGGCTTCTTGAAGAAGCTGCTGGTATA
JMFF048M09+ TTACTGAGGAGATGGACTCCATTGATACAGGGCTTCTTGAAGAAGCTGCTGGTATAATTA
____________________________________________________________
consensus TTACTGAGGAGATGGACTCCATTGATACAGGGCTTCTTGAAGAAGCTGCTGGTATAATTA

. : . : . : . : . : . :
JMFF048M09+ AGGAATGA
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consensus AGGAATGA