Alignment Contig 628

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF009C01+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF011B01+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF052F07+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF018C12+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF051D06+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF051H07+ AGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMFF021M03+ ACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF012A07+ AGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF012M05+ ACCGGGCCGCACACTCAAAAAG
JMFF020O16+ ACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF024M07+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF030B02+ GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG
JMSF052K03+ AGTCCACCGGGCCGCACACTCAAAAAG
____________________________________________________________
consensus GAAGCTAAATCGGCAGCACAATACTAGGCTTCCAGTCCACCGGGCCGCACACTCAAAAAG

. : . : . : . : . : . :
JMSF009C01+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMFF027A16+ AGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF011B01+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF052F07+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF018C12+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF051D06+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF051H07+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMFF021M03+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF012A07+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF012M05+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMFF046P02+ ACTAGGTTGATTTCTGGGTGGC
JMFF020O16+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF024M07+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF030B02+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMSF052K03+ CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC
JMFF012B10+ AGTGAACAACTAGGTTGATTTCTGGGTGGC
____________________________________________________________
consensus CCTTTCGGTTGTTACAGATACGAGCTTCAAAGTGAACAACTAGGTTGATTTCTGGGTGGC

. : . : . : . : . : . :
JMSF009C01+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMFF027A16+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF011B01+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF052F07+ ATTTGAGCTAGTAAGTAAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF018C12+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF051D06+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF051H07+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMFF021M03+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF012A07+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF012M05+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMFF046P02+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMFF020O16+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF024M07+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF030B02+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMSF052K03+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
JMFF012B10+ ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA
____________________________________________________________
consensus ATTTGAGCTAGTAAG-AAGATAATTGTTTCGATCATGTCATCCAAGCCGTTGGATTATGA

. : . : . : . : . : . :
JMSF009C01+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMFF027A16+ GAATCTGAACGAAAAT
JMSF011B01+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF052F07+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF018C12+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF051D06+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF051H07+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMFF021M03+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF012A07+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF012M05+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMFF046P02+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMFF020O16+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF024M07+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF030B02+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMSF052K03+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
JMFF012B10+ GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG
____________________________________________________________
consensus GAATCTGAACGAAAATGTGAAGAAGTGTCAATATGCTGTCAGAGGTGAGCTGTATCTTCG

. : . : . : . : . : . :
JMSF009C01+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF011B01+ AGCTTCTGAGCTTCAGA
JMSF052F07+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF018C12+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF051D06+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF051H07+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMFF021M03+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF012A07+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF012M05+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMFF046P02+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMFF020O16+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF024M07+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF030B02+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMSF052K03+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
JMFF012B10+ AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA
____________________________________________________________
consensus AGCTTCTGAGCTTCAGAAGGAAGGGAAGAAGATCATCTTCACAAATGTTGGCAACCCCCA

. : . : . : . : . : . :
JMSF009C01+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGC
JMSF052F07+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF018C12+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF051D06+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF051H07+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMFF021M03+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF012A07+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF012M05+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMFF046P02+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMFF020O16+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF024M07+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF030B02+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMSF052K03+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
JMFF012B10+ TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC
____________________________________________________________
consensus TGCCCTTGGACAAAAGCCCCTAACCTTTCCTCGCCAGGTTATTGCTCTTTGCCAAGCCCC

. : . : . : . : . : . :
JMSF052F07+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMSF018C12+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMSF051D06+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMSF051H07+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMFF021M03+ GTTTTTACTGGATGATCCGAATGTGGGACTTG
JMSF012A07+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGC
JMSF012M05+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMFF046P02+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMFF020O16+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMSF024M07+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMSF030B02+ GTTTTTACTGGATGATCCGAATGTGGGACTTGT-TTCCCTGCTGATGCAATTGCAAGAGC
JMSF052K03+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
JMFF012B10+ GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC
____________________________________________________________
consensus GTTTTTACTGGATGATCCGAATGTGGGACTTGTGTTCCCTGCTGATGCAATTGCAAGAGC

. : . : . : . : . : . :
JMSF052F07+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF018C12+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF051D06+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF051H07+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF012M05+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMFF046P02+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMFF020O16+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF024M07+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF030B02+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMSF052K03+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
JMFF012B10+ TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT
____________________________________________________________
consensus TAAACAATTTCTTTCAATGACTTCTGGGGGTCTAGGTGCTTATAGTGACTCCCGTGGCAT

. : . : . : . : . : . :
JMSF052F07+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMSF018C12+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGAT
JMSF051D06+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMSF051H07+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMSF012M05+ TCCTGGAGTAAGGAAAGAAGTGGCTGANTTCATCGGGAGACGTGATGGAT
JMFF046P02+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMFF020O16+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMSF024M07+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMSF030B02+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMSF052K03+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
JMFF012B10+ TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA
____________________________________________________________
consensus TCCTGGAGTAAGGAAAGAAGTGGCTGAGTTCATCGGGAGACGTGATGGATACCCAAGTGA

. : . : . : . : . : . :
JMSF052F07+ TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
JMSF051D06+ TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
JMSF051H07+ TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
JMFF046P02+ TCCCGAGCTCATATTCCTGACTGATGNGGNCAGCNAAGGAGTAATGCAGATCTTGAATAG
JMFF020O16+ TCCCGAGCTCATATTCCTGACTGATGGGGCCA
JMSF024M07+ TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
JMSF030B02+ TCCCTAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
JMSF052K03+ TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
JMFF012B10+ TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG
____________________________________________________________
consensus TCCCGAGCTCATATTCCTGACTGATGGGGCCAGCAAAGGAGTAATGCAGATCTTGAATAG

. : . : . : . : . : . :
JMSF052F07+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
JMSF051D06+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
JMSF051H07+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
JMFF046P02+ TATCATC
JMSF024M07+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
JMSF030B02+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
JMSF052K03+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
JMFF012B10+ TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC
____________________________________________________________
consensus TATCATCCGGGGTCCAAATGATGGGATATTGGTCCCGGTTCCACAATATCCATTGTACTC

. : . : . : . : . : . :
JMSF052F07+ AGCTACAATATCTTTACTTGGGGGCTCTCTTG
JMSF051D06+ AGCTACAATATCTTTACTTGGGGGCTCTCTTG
JMSF051H07+ AGCTACAATATCTTTACTTGGGGGCTCTCTT
JMSF024M07+ AGCTACAATATCTTTAC
JMSF030B02+ AGCTACNATATCTTTAC
JMSF052K03+ AGCTACAATATCTTTACTTGGGGGCTCTCTTGTTCCTTATT
JMFF012B10+ AGCTACAATATCTTTACTTGGGGGCTCTCTTGTTCCTTATTTTCTTGAA
____________________________________________________________
consensus AGCTACAATATCTTTACTTGGGGGCTCTCTTGTTCCTTATTTTCTTGAA