Alignment Contig 6264

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFS085H10- ACATGTGCTTACCAAAAACCTACATGACATGATATAAGCATTTGAATTCACTTGAACTAG
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consensus ACATGTGCTTACCAAAAACCTACATGACATGATATAAGCATTTGAATTCACTTGAACTAG

. : . : . : . : . : . :
JMFS085H10- TTGCTTTTTTAATCAAGCAACAAGGTTGTCATTAAGGGAAAGTGAAGCAAGTTGGTCAGC
rJMFF012A06+ AGTGAAGCAAGTTGGTCAGC
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consensus TTGCTTTTTTAATCAAGCAACAAGGTTGTCATTAAGGGAAAGTGAAGCAAGTTGGTCAGC

. : . : . : . : . : . :
JMFS085H10- CGGGATTTTAGCCTGCTGAACGTTCCTCAGAACTTCCAGAGCCTCTGCAACTTTGGCCTT
rJMFF008G21+ CTGCTGAACGTTCCTCAGAACTTCCAGAGCCTCTGCAACTTTGGCCTT
rJMFF041B06+ CTGCTGAACGTTCCTCAGAACTTCCAGAGCCTCTGCAACTTTGGCCTT
JMFS054C04+ CTGCTGAACGTTCCTCANAACTTCCAGAGCCTCTGCAACTTTGGCCTT
rJMFF012A06+ CGGGCTTTTAGCCTGCTGAACGTTCCTCAGAACTTCCAGAGCCTCTGCAACTTTGGCCTT
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consensus CGGGATTTTAGCCTGCTGAACGTTCCTCAGAACTTCCAGAGCCTCTGCAACTTTGGCCTT

. : . : . : . : . : . :
JMFS085H10- CAAAGCCTCTGGTGACTCAAGCAGATGTAAAACCTCAGTCTGGTCCATCTCAAGAAGCAT
rJMFF008G21+ CAAAGCCTCTGGTGACTCAAGCAGATGTAAAACCTCAGTCTGGTCCATCTCAAGAAGCAT
rJMFF041B06+ CAAAGCCTCTGGTGACTCAAGCAGATGTAAAACCTCAGTCTGGTCCATCTCAAGAAGCAT
JMFS054C04+ CAAAGCCTCTGGTGACTCAAGCAGATGTAAAACCTCAGTCTGGTCCATCTCAAGAAGCAT
rJMFF012A06+ CAAAGCCTCTGGTGACTCAAGCAGATGTAAAACCTCAGTCTGGTCCATCTCAAGAAGCAT
JMFS040B09- TCAAGCAGATGTANAACCTCAGTCTGGTCCATCTCAAGAAGCAT
rJMSF043A15+ GAAGCAT
rJMSF033J19+ AAGCAT
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consensus CAAAGCCTCTGGTGACTCAAGCAGATGTAAAACCTCAGTCTGGTCCATCTCAAGAAGCAT

. : . : . : . : . : . :
JMFS085H10- GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMFF008G21+ GCCTGTAACTTTANCTGCGTGCTCGTGCTCTANCTGATCAACAAGTGGGTACAAATTCTC
rJMFF041B06+ GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
JMFS054C04+ GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMFF012A06+ GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
JMFS040B09- GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMFF033B17+ CAACAAGTGGGTACAAATTCTC
rJMFF007M08+ CAACAAGTGGGTACAAATTCTC
rJMSF043A15+ GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMFF009O22+ CTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMFF024P21+ CTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMSF033J19+ GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
rJMFF015I15+ CAACAAGTGGGTACAAATTCTC
rJMFF017P20+ ACAAGTGGGTACAAATTCTC
rJMSF025G04+ AACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC
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consensus GCCTGTAACTTTAGCTGCGTGCTCGTGCTCTAGCTGATCAACAAGTGGGTACAAATTCTC

. : . : . : . : . : . :
JMFS085H10- GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF008G21+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGNGCATTTGCAA-GGGCACTTGCTANTGCTG
rJMFF041B06+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
JMFS054C04+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF012A06+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
JMFS040B09- GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF033B17+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF007M08+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF014G04+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF005F14+ CCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAAAGGGCACTTGCTAGTGCTG
rJMSF043A15+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF009O22+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF024P21+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMSF033J19+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF015I15+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMFF017P20+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
rJMSF025G04+ GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG
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consensus GCCCAACATCGTCCTCTGCTGTTCAGGTGGTGCATTTGCAA-GGGCACTTGCTAGTGCTG

. : . : . : . : . : . :
JMFS085H10- TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF008G21+ TAATTGGAACGGGCGCANCATCTCAAGGAAGCATGCCACCCATATCATA
rJMFF041B06+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
JMFS054C04+ TAATTGGAACGGGCGCAGCAT
rJMFF012A06+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
JMFS040B09- TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF033B17+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF007M08+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF014G04+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF005F14+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMSF043A15+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF009O22+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF024P21+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMSF033J19+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF015I15+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMFF017P20+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
rJMSF025G04+ TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA
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consensus TAATTGGAACGGGCGCAGCATCTCGAGGAAGCATGCCACCCATATCATACGGAAGAGAAA

. : . : . : . : . : . :
JMFS085H10- CCATGCCGGCAACACCTGGCATGGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF041B06+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF012A06+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCC
JMFS040B09- CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF033B17+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF007M08+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF014G04+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF005F14+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMSF043A15+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF009O22+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF024P21+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMSF033J19+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMSF017P15+ ACCTGGATAGCGAT
rJMFF015I15+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMFF017P20+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
rJMSF025G04+ CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT
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consensus CCATGCCCCCAACACCTGGCATAGGCCCATCTGACACATTACGGCCACCTGGATAGCGAT

. : . : . : . : . : . :
JMFS085H10- ACATCCATCCCCTTGAT-GCAGCAGCAGATGCTCCCAAGGGGAAGGATGTATCGCTATCC
rJMFF041B06+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATG
JMFS040B09- ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF033B17+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF007M08+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF014G04+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF005F14+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMSF043A15+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF009O22+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF024P21+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMSF033J19+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMSF017P15+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF015I15+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMFF017P20+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
rJMSF025G04+ ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT
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consensus ACATCCTTCCCCTTGGGAGCATCTGCTGCTGCATCAAGGGGATGGGCTGTTGAGTTTGTT

. : . : . : . : . : . :
JMFS085H10- A
JMFS040B09- GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMFF033B17+ GTACAGGTCCTGCTCCACGTCTGCCACCCTGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMFF007M08+ GTACAGGTCCTGCTCCACGTCTGCCACCTGGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMFF014G04+ GTACAGGTCCTGCTCCACGTCTGCCACCCTGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMFF005F14+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMSF043A15+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCC
rJMFF009O22+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMFF024P21+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMSF033J19+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMSF017P15+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMFF015I15+ GTACAGGTCCTGCTCCACGTCTGCCACCTG
rJMFF017P20+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
rJMSF025G04+ GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC
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consensus GTACAGGTCCTGCTCCACGTCTGCCACC-TGGACGCGGTGCCTGCTGTCCCTGCTGCACC

. : . : . : . : . : . :
JMFS040B09- ATCGGCACAAAGAAATTTGGCATAGGACCCCCTCCAGGTCGCATTCCAGGAACAAGCTGC
rJMFF033B17+ ATCGGCACAAAGAAATTTGGCATA
rJMFF007M08+ ATCGGCACNAAGAAATTTG
rJMFF014G04+ ATCGGCACAAAGAAATTTGGCATAGGACCCCCTCCAGGTCGCATTCCAGGAACAAGCTGC
rJMFF005F14+ ATCGGCACAAAGAAATTTGGCATAGGACCCCCTCCAGGTCGCATTCCAGGAACAAGCTGC
rJMFF009O22+ ATCGGCACAAAGAAATTTGGCATAGG
rJMFF024P21+ ATCGGCACAAAGAAATTTGGCATANGACCCCCTCCAGGTCGCATTCCAGGAACAAGCTGC
rJMSF033J19+ ATCGGCACAAAGAAATTTGGCATAGGACCCCCTCCAGGTCGCATTCCAGGAACAAGCTGC
rJMSF017P15+ ATCGGCACAAAGAAATTTGGCATAGG
rJMFF017P20+ ATCGGCA
rJMSF025G04+ ATCGGCACAAAGAAATTTGGCATAGG
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consensus ATCGGCACAAAGAAATTTGGCATAGGACCCCCTCCAGGTCGCATTCCAGGAACAAGCTGC

. : . : . : . : . : . :
JMFS040B09- TGTTGATACCCAAATCCAGCCTGAGGAGGAATTATAGCAGGTGGACCTTGTCCATAAAAG
rJMFF014G04+ TGTTGAT
rJMFF005F14+ TGTTGATACCCAA
rJMFF024P21+ TGTTGATACCCAA
rJMSF033J19+ TGTTGATACCC
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consensus TGTTGATACCCAAATCCAGCCTGAGGAGGAATTATAGCAGGTGGACCTTGTCCATAAAAG

. : . : . : . : . : . :
JMFS040B09- AGTTGTTGTGGCATACCAGGTGCACCAGGAGGATACATTGGAATACGAGGAGCAAGCGAT
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consensus AGTTGTTGTGGCATACCAGGTGCACCAGGAGGATACATTGGAATACGAGGAGCAAGCGAT

. : . : . : . : . : . :
JMFS040B09- GGTGTCATTGCAACTGGTCTCATCTCTGAGAACTGCGC
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consensus GGTGTCATTGCAACTGGTCTCATCTCTGAGAACTGCGC