Alignment Contig 6164

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN040H03- ACAGCAATGCAATAGTTTTATTTAACTAGTTGTCACAGTACATGAAATATTCACATGATC
rJMFF036H01+ TTTTATTTAACTAGTTGTCACAGTACATGAAATATTCACATGATC
____________________________________________________________
consensus ACAGCAATGCAATAGTTTTATTTAACTAGTTGTCACAGTACATGAAATATTCACATGATC

. : . : . : . : . : . :
JMFN040H03- ATAAGCTAACAAAGGACAAGCTTCCTATG-TACACAGGAAAATATCAATGACCCACATTC
rJMFF036H01+ ATAAGCTAACAAAGGACAAGCTTCCTATG-TACACAGGAAAATATCAATGACCCACATTC
rJMSF036H19+ CTAACAAAGGACAAGCTTCCTATGGTACACAGGAAAATATCAATGACCCACATTC
rJMSF032B01+ CTAACAAAGGACAAGCTTCCTATG-TACACAGGAAAATATCAATGACCCACATTC
rJMSF051F17+ TTCCTATG-TACACAGGAAAATATCAATGACCCACATTC
____________________________________________________________
consensus ATAAGCTAACAAAGGACAAGCTTCCTATG-TACACAGGAAAATATCAATGACCCACATTC

. : . : . : . : . : . :
JMFN040H03- A-TATGACTAACTATTCCTAGTT-AATACTTATTGACACACATACAAAATAGTAATCAAA
rJMFF036H01+ A-TATGACTAACTATTCCTAGTT-AATACTTATTGCCACACATACAAAATAGTAATCAAA
rJMSF036H19+ AGTATGACTAACTATTCCTAGTTTAATACTTATTGCCACACATACAAAATAGTAATCAAA
rJMSF032B01+ A-TATGACTAACTATTCCTAGTT-AATACTTATTGCCACACATACAAAATAGTAATCAAA
rJMSF051F17+ A-TATGACTAACTATTCCTAGTT-AATACTTATTGCCACACATACAAAATAGTAATCAAA
____________________________________________________________
consensus A-TATGACTAACTATTCCTAGTT-AATACTTATTGCCACACATACAAAATAGTAATCAAA

. : . : . : . : . : . :
JMFN040H03- TGCCAAGTCCTCTATCACTCACTTGACAAGTGAGCGCATTTCCTCACCAAACAAACTAGA
rJMFF036H01+ TGCCAAGTCCTCTATCACTCACTTGACAAGTGAGCGCATTTCCTCACCAAACAAACTAGA
rJMSF036H19+ TGCCAAGTCCTCTATCACTCACTTGACAAGTGAGCGCATTTCCTCACCAAACAAACTAGA
rJMSF032B01+ TGCCAAGTCCTCTATCACTCACTTGACAAGTGAGCGCATTTCCTCACCAAACAAACTAGA
rJMSF051F17+ TGCCAAGTCCTCTATCACTCACTTGACAAGTGAGCGCATTTCCTCACCAAACAAACTAGA
____________________________________________________________
consensus TGCCAAGTCCTCTATCACTCACTTGACAAGTGAGCGCATTTCCTCACCAAACAAACTAGA

. : . : . : . : . : . :
JMFN040H03- AAAGCAAGTACACATTAATTCAGTAGACTGCATAACTGGAAATTGAGGAAATACACACAC
rJMFF036H01+ AAAGCAAGTACACATTAATTCAGTAGACTGCATAACTGGAAATTGAGGAAATACACACAC
rJMSF036H19+ AAAGCAAGTACACATTAATTCAGTAGACTGCATAACTGGAAATTGAGGAAATACACACAC
rJMSF032B01+ AAAGCAAGTACACATTAATTCAGTAGACTGCATAACTGGAAATTGAGGAAATACACACAC
rJMSF051F17+ AAAGCAAGTACACATTAATTCAGTAGACTGCATAACTGGAAATTGAGGAAATACACACAC
____________________________________________________________
consensus AAAGCAAGTACACATTAATTCAGTAGACTGCATAACTGGAAATTGAGGAAATACACACAC

. : . : . : . : . : . :
JMFN040H03- TGGCCTCAAGTGTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA
rJMFF036H01+ TGGCCTCAAGTGTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA
rJMSF036H19+ TGGCCTCAAGTGTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA
rJMSF032B01+ TGGCCTCAAGTGTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA
rJMSF051F17+ TGGCCTCAAGTGTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA
JMFN029P19- GTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA
____________________________________________________________
consensus TGGCCTCAAGTGTAGCGGGATAGGTCTTCTTTCTTACATCCAGCTTTGGTGTGTAATATA

. : . : . : . : . : . :
JMFN040H03- AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA
rJMFF036H01+ AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA
rJMSF036H19+ AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA
rJMSF032B01+ AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA
rJMSF051F17+ AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA
JMFN029P19- AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA
____________________________________________________________
consensus AGCTTTCCTGGGCTCAGATGGATTCTCCGTGCCCCTGCTACTGCTTAAGGAAGGGTCAGA

. : . : . : . : . : . :
JMFN040H03- ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC
rJMFF036H01+ ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC
rJMSF036H19+ ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC
rJMSF032B01+ ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC
rJMSF051F17+ ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC
JMFN029P19- ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC
____________________________________________________________
consensus ATTACTTGCTAGCATTGACAATAAGCTTCCTCCATGAACCCTTCCTTCAGGAATTGTAAC

. : . : . : . : . : . :
JMFN040H03- TGGAATAGATGGAGGACTGCCTAGAATTG
rJMFF036H01+ TGGAATAGATGGAGGACTGCCTAGAATTGGCATGGTAGCTTGTTTAAAACTGATATATTT
rJMSF036H19+ TGGAATAGATGGAGGACTGCCTAGAATTGGCATGGTAGCTTGTTTAAAACTGATATATTT
rJMSF032B01+ TGGAATAGATGGAGGACTGCCTAGAATTGGCATGGTAGCTTGTTTAAAACTGATATATTT
rJMSF051F17+ TGGAATAGATGGAGGACTGCCTAGAATTGGCATGGTAGCTTGTTTAAAACTGATATATTT
JMFN029P19- TGGAATAGATGGAGGACTGCCTAGAATTGGCATGGTAGCTTGTTTAAAACTGATATATTT
____________________________________________________________
consensus TGGAATAGATGGAGGACTGCCTAGAATTGGCATGGTAGCTTGTTTAAAACTGATATATTT

. : . : . : . : . : . :
rJMFF036H01+ CCAATCAGAACCATTTGCAGATGTTACAACACTTCTTTCCACAGTCATGCTATCAGCATC
rJMSF036H19+ CCAATCAGAACCATTTGCAGATGTTACAACACTTCTTTCCACAGTCATGCTATCAGCATC
rJMSF032B01+ CCAATCAGAACCATTTGCAGATGTTACAACACTTCTTTCCACAGTCATGCTATCAGCATC
rJMSF051F17+ CCAATCAGAACCATTTGCAGATGTTACAACACTTCTTTCCACAGTCATGCTATCAGCATC
JMFN029P19- CCAATCAGAACCATTTGCAGATGTTACAACACTTCTTTCCACAGTCATGCTATCAGCATC
____________________________________________________________
consensus CCAATCAGAACCATTTGCAGATGTTACAACACTTCTTTCCACAGTCATGCTATCAGCATC

. : . : . : . : . : . :
rJMFF036H01+ CATGTCCTCTGTAGTGTCAATCTCTTTCATATTCTCAGTTCTCTTTGGTGTTATCTCCTG
rJMSF036H19+ CATGTCCTCTGTAGTGTCAATCTCTTTCATATTCTCAGTTCTCTTTGGTGTTATCTCCTG
rJMSF032B01+ CATGTCCTCTGTAGTGTCAATCTCTTTCATATTCTCAGTTCTCTTTGGTGTTATCTCCTG
rJMSF051F17+ CATGTCCTCTGTAGTGTCAATCTCTTTCATATTCTCAGTTCTCTTTGGTGTTATCTCCTG
JMFN029P19- CATGTCCTCTGTAGTGTCAATCTCTTTCATATTCTCAGTTCTCTTTGGTGTTATCTCCTG
____________________________________________________________
consensus CATGTCCTCTGTAGTGTCAATCTCTTTCATATTCTCAGTTCTCTTTGGTGTTATCTCCTG

. : . : . : . : . : . :
rJMFF036H01+ GACTACAACTCCGAGGGTAGCTCCACCATGAACCCGTTTATCCTGAACCAGAGCACCATG
rJMSF036H19+ GACTACAACTCCGAGGGTAGCTCCACCATGAACCCGTTTATCCTGAACCAGAGCACCATG
rJMSF032B01+ GACTACAACTCCGAGGGTAGCTCCACCATGAACCCGTTTATCCTGAACCAGAGCACCATG
rJMSF051F17+ GACTACAACTCCGAGGGTAGCTCCACCATGAACCCGTTTATCCTGAACCAGAGCACCATG
JMFN029P19- GACTACAACTCCGAGGGTAGCTCCACCATGAACCCGTTTATCCTGAACCAGAGCACCATG
____________________________________________________________
consensus GACTACAACTCCGAGGGTAGCTCCACCATGAACCCGTTTATCCTGAACCAGAGCACCATG

. : . : . : . : . : . :
rJMFF036H01+ AGATGCACAAAGCCCTGTCTTTCCCCTGGCAAATG
rJMSF036H19+ AGATGCACAAAGCCC
rJMSF032B01+ AGATGCACAAAGCCCTGTCTTTCCCCTGG
rJMSF051F17+ AGATGCACAAAGCCCTGTCTTTCCCCTGGCAAATGAATTACAAGGAATTTCACCTTTGCC
JMFN029P19- AGATGCACAAAGCCCTGTCTTTCCCCTGGCAAATGAATTACAAGGAATTTCACCTTTGCC
JMFF035M23- TGCC
____________________________________________________________
consensus AGATGCACAAAGCCCTGTCTTTCCCCTGGCAAATGAATTACAAGGAATTTCACCTTTGCC

. : . : . : . : . : . :
rJMSF051F17+ AAATTCAGAACTAGGCTGGCCCCAATAGCATCTTTTCC-TCCNCCATGTGCCTTGCAAAA
JMFN029P19- AAATTCAGAACTAGGCTGGCCCCAATAGCATCTTTTCCCTCCACCATGTGCCTTGCAAAA
JMFF035M23- AAATTCAGAACCAGCCTGACCCCAAGAGCATCTCTTCCCTCCACCATGTGCCTTGCAGAA
____________________________________________________________
consensus AAATTCAGAACTAGGCTGGCCCCAATAGCATCTTTTCCCTCCACCATGTGCCTTGCAAAA

. : . : . : . : . : . :
rJMSF051F17+ ATCAGTGCTTCC
JMFN029P19- ATCAGTGCTTCCCTGAGCACTTTTTCCACAACCTTCAAACTGGCATCTCTTGCCCCCACC
JMFF035M23- TTCAGTGCTTCCTTGGGCACTTTTTCCACACCCTTCAAACTTGCATCTCTTGCCCCCACC
____________________________________________________________
consensus ATCAGTGCTTCCCTGAGCACTTTTTCCACAACCTTCAAACTGGCATCTCTTGCCCCCACC

. : . : . : . : . : . :
JMFN029P19- ATGACGCACACAGAAATC
JMFF035M23- GTGGCGCACACAAAAATCAGTCCGGCCCCTTGCACTCTTTGTGCAATCGGTCACAGCACA
____________________________________________________________
consensus ATGACGCACACAAAAATCAGTCCGGCCCCTTGCACTCTTTGTGCAATCGGTCACAGCACA

. : . : . : . : . : . :
JMFF035M23- TCTCTTACCGCCCCCATGTGCTACACAGTAAAGAGTCCCTCCGTGCACACTTTTTGGGCA
____________________________________________________________
consensus TCTCTTACCGCCCCCATGTGCTACACAGTAAAGAGTCCCTCCGTGCACACTTTTTGGGCA

. : . : . : . : . : . :
JMFF035M23- AACCCCACCTCCTTGGAATAAACATCTTTTCCCTCCACCATGGCCCTTGCAAAATGGTGT
____________________________________________________________
consensus AACCCCACCTCCTTGGAATAAACATCTTTTCCCTCCACCATGGCCCTTGCAAAATGGTGT

. : . : . : . : . : . :
JMFF035M23- GCTCCCTTCTGCACCCTTTGTACACCCTTCATAAATGCAACGCTTACCGCCACCATGTGC
____________________________________________________________
consensus GCTCCCTTCTGCACCCTTTGTACACCCTTCATAAATGCAACGCTTACCGCCACCATGTGC

. : . : . : . : . : . :
JMFF035M23- TTTACAGAACATTGTGCTCCCTTGTGCCCCCTTGGTGCATTGTGGATACTGGCATCGCCG
____________________________________________________________
consensus TTTACAGAACATTGTGCTCCCTTGTGCCCCCTTGGTGCATTGTGGATACTGGCATCGCCG

. : . : . : . : . : . :
JMFF035M23- ACCGCCTCCATGTGAAATGCAGAGACCAGAAAGGCCTTCGGCACTCTTTGTGCAGTTCTC
____________________________________________________________
consensus ACCGCCTCCATGTGAAATGCAGAGACCAGAAAGGCCTTCGGCACTCTTTGTGCAGTTCTC

. : . : . : . : . : . :
JMFF035M23- TTTCTGGCATCTCTTGCCTCCACCGTGGCGAATGCACAACC
____________________________________________________________
consensus TTTCTGGCATCTCTTGCCTCCACCGTGGCGAATGCACAACC