Alignment Contig 6073

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF044I01+ ATCAAGATTCAAGAAAGGGGGATANCTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMSF014I11+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFF034A13+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMSF002C21+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMSF001L13+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFS038F09+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFF048P05+ GATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFF034C17+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFF039E12+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFF002G22+ AAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFF044B19+ GATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
JMFS103H05+ TTGTGTCTCACCAAAATTCCACTGGAAATGTCTG
____________________________________________________________
consensus ATCAAGATTCAAGAAAGGGGGATA-CTTGTGTCTCACCAAAATTCCACTGGAAATGTCTG

. : . : . : . : . : . :
JMFF044I01+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMSF014I11+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFF034A13+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMSF002C21+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMSF001L13+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFS038F09+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFF048P05+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFF034C17+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFF039E12+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFF002G22+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFF044B19+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
JMFS103H05+ CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA
____________________________________________________________
consensus CCCTGAGTTGGGGTTGTCTTCTCTTTGTGCTTCTCCTGGCCACCAGTATTGATGGTGGGA

. : . : . : . : . : . :
JMFF044I01+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMSF014I11+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFF034A13+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMSF002C21+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMSF001L13+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFS038F09+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFF048P05+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFF034C17+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFF039E12+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFF002G22+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFF044B19+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
JMFS103H05+ AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG
____________________________________________________________
consensus AAGGGTCTTCTTCTGTGGATCAGCAAAAACTGGACGCAGTCTTGGATTTGCCAGGGCTTG

. : . : . : . : . : . :
JMFF044I01+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMSF014I11+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFF034A13+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGT
JMSF002C21+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMSF001L13+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFS038F09+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFF048P05+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFF034C17+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFF039E12+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFF002G22+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFF044B19+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
JMFS103H05+ GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA
____________________________________________________________
consensus GCTTCAATGTCAGCTTTGCACACTATTCTGGGTATGTGACTGTGAACCAGGAGTCTGGGA

. : . : . : . : . : . :
JMFF044I01+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMSF014I11+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMSF002C21+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMSF001L13+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFS038F09+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFF048P05+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFF034C17+ GAGCACTTTTTTTATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFF039E12+ GAGCACTTTTTTTATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFF002G22+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFF044B19+ GAGCACTTTTTTTATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
JMFS103H05+ GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT
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consensus GAGCACTTTTTT-ATTGGTTCTTTGAGGCTGTGGAGGACCCTTCTTCTAAGCCTCTTGTT

. : . : . : . : . : . :
JMFF044I01+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMSF014I11+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMSF002C21+ CTTTGGCTCAATGGANGGCCTGGATGTTCAT
JMSF001L13+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFS038F09+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFF048P05+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFF034C17+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFF039E12+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFF002G22+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFF044B19+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
JMFS103H05+ CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT
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consensus CTTTGGCTCAATGGAGGGCCTGGATGTTCATCAATTGCTTTTGGATTGGCTGAGGAAGTT

. : . : . : . : . : . :
JMFF044I01+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMSF014I11+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMSF001L13+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTT
JMFS038F09+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMFF048P05+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGA
JMFF034C17+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMFF039E12+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMFF002G22+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMFF044B19+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
JMFS103H05+ GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC
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consensus GGGCCTTTTCATGTTGAGAAAGATGGGAAGACCCTATACTGGAATCCTTACTCTTGGAAC

. : . : . : . : . : . :
JMFF044I01+ TTAG
JMSF014I11+ TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT
JMFS038F09+ TTAG
JMFF034C17+ TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT
JMFF039E12+ TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT
JMFF002G22+ TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT
JMFF044B19+ TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT
JMFS103H05+ TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT
____________________________________________________________
consensus TTAGCTGCAAATCTATTGTTTGTTGACTCTCCCGCGGGAGTTGGTTATTCGTATTCGAAT

. : . : . : . : . : . :
JMSF014I11+ ACTTCCTCTGATATTCNTACTCATGGCGA
JMFF034C17+ ACTTCCTCTGATATTCTTACTCATGGCGATA
JMFF039E12+ ACTTCCTCTGATATTCTTACTCATGGCGATAAAAGGACAGCTGAGGATTCGCTAGAGTTT
JMFF002G22+ ACTTCCTCTGATATTCTTACTCATGGCGATAAAAGG
JMFF044B19+ ACTTCCTCTGATATTCTTACTCATGGCGATAAAAGGACAGCTGAGGATTCGCTAGAGTTT
JMFS103H05+ ACTTCCTCTGATATTCTTACTCATGGCGATAAAAGGACAGCTGAGGATTCGCTAGAGTTT
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consensus ACTTCCTCTGATATTCTTACTCATGGCGATAAAAGGACAGCTGAGGATTCGCTAGAGTTT

. : . : . : . : . : . :
JMFF039E12+ TTACTAAAATGGTTCGAAAGGT
JMFF044B19+ TTACTANAATGGTTCGAAAGGTTCCCCACAATATAAGGGAGGGAGTTTTATATCACAGG
JMFS103H05+ TTACTAAAATGGTTCGAAAGGTTCCCACAATATAAAGGGAGGGAGTTTTATATC
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consensus TTACTAAAATGGTTCGAAAGGTTCCCAAAAAAAAAAGGGAGGGAGTTTTATATCACAGG