Alignment Contig 6008

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF031C03+ GGATTTTAGTACGTAGAAGGTGTCACGTATATGAATCCGACGAGGGGGCAGATTCAAGTC
JMFF020N18+ GGATTTTAGTACGTAGAAGGTGTCACGTATATGAATCCGACGAGGGGGCAGATTCAAGTC
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consensus GGATTTTAGTACGTAGAAGGTGTCACGTATATGAATCCGACGAGGGGGCAGATTCAAGTC

. : . : . : . : . : . :
JMFF031C03+ TTTCACGAGCGAGCTTTCAAGTGATTAGGACTCTCCATTTCTCTCTCTCTCTAAAAACTC
JMFF020N18+ TTTCACGAGCGAGCTTTCAAGTGATTAGGACTCTCCATTTCTCTCTCTCTCTAAAAACTC
JMSF040N15+ CGAGCGAGCTTTCAAGTGATTAGGACTCTCCATTTCTCTCTCTCTCTAAAAACTC
JMSF009B14+ CGAGCGAGCTTTCAAGTGATTAGGACTCTCCATTTCTCTCTCTCTCTAAAAACTC
JMFS158G01+ TTAGGACTCTCCATTTCTCTCTCTCTCTAAAAACTC
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consensus TTTCACGAGCGAGCTTTCAAGTGATTAGGACTCTCCATTTCTCTCTCTCTCTAAAAACTC

. : . : . : . : . : . :
JMFF031C03+ CAAAACCGCGTCGACCGAGCTGAATTTGATAAGCAGAGGCAGTGAGGAAAAACGAGGGAG
JMFF020N18+ CAAAACCGCGTCGACCGAGCTGAATTTGATAAGCAGAGGCAGTGAGGAAAAACGAGGGAG
JMSF040N15+ CAAAACCGCGTCGACCGAGCTGAATTTGATAAGCAGAGGCAGTGAGGAAAAACGAGGGAG
JMSF009B14+ CAAAACCGCGTCGACCGAGCTGAATTTGATAAGCAGAGGCAGTGAGGAAAAACGAGGGAG
JMFS158G01+ CAAAACCGCGTCGACCGAGCTGAATTTGATAAGCAGAGGCAGTGAGGAAAAACGAGGGAG
JMFF044J23+ AAGCAGAGGCAGTGAGGAAAAACGAGGGAG
JMFS097D01+ GAAAAACGAGGGAG
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consensus CAAAACCGCGTCGACCGAGCTGAATTTGATAAGCAGAGGCAGTGAGGAAAAACGAGGGAG

. : . : . : . : . : . :
JMFF031C03+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
JMFF020N18+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
JMSF040N15+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
JMSF009B14+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
JMFS158G01+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
JMFF044J23+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
JMFS097D01+ AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA
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consensus AGAGAGAAAATTGATGGTTTGTTTGCGTTTCACGGGTGGCAGCTGGGAAGAGGAGAGTTA

. : . : . : . : . : . :
JMFF031C03+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
JMFF020N18+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
JMSF040N15+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
JMSF009B14+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
JMFS158G01+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
JMFF044J23+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
JMFS097D01+ TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA
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consensus TTCAACAATCAGCGAGCTTTGCTTACCAACTCTTTTACTTACTCGCCTACTATTTACTTA

. : . : . : . : . : . :
JMFF031C03+ CTGAGCCNAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG
JMFF020N18+ CTGAGCCGAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG
JMSF040N15+ CTGAGCCGAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG
JMSF009B14+ CTGAGCC
JMFS158G01+ CTGAGCCGAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG
JMFF044J23+ CTGAGCCGAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG
JMFS097D01+ CTGAGCCGAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG
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consensus CTGAGCCGAACGGCGAGTGAGTGAGTGAGTGATTCTTTGAGTTTATACATTTCTGGAGTG

. : . : . : . : . : . :
JMFF031C03+ CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
JMFF020N18+ CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
JMSF040N15+ CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
JMFS158G01+ CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
JMFF044J23+ CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
JMFS097D01+ CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
JMFS135G12+ TAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA
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consensus CGGATTATGGCTAGGCCACTGCATAGAGGTTTATCTGTTGGAGGTGGGGGCCGGCACTCA

. : . : . : . : . : . :
JMFF031C03+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATANNATANAGAAAGAAGAT
JMFF020N18+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAGATAGAGAAAGAAGAT
JMSF040N15+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAGATAGAGAAAGAAGAT
JMFS158G01+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAGATAGAGAAAGAAGAT
JMFF044J23+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAGATAGAGAAAGAAGAT
JMFS097D01+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAGATAGAGAAAGAAGAT
JMFS135G12+ GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAAATAGAGAAAGAAGAT
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consensus GGGAACAGTCAGAGCTTCTTGGATGACTCTCAGATGAAAGATAAGATAGAGAAAGAAGAT

. : . : . : . : . : . :
JMFF031C03+ TTTGATCATAGTCAA
JMFF020N18+ TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG
JMSF040N15+ TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG
JMFS158G01+ TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG
JMFF044J23+ TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG
JMFS097D01+ TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG
JMFS135G12+ TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG
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consensus TTTGATCATAGTCAATCAGCTGGTGATCAGAGTTTCCTCTCTATGAAATTTCTTTTACGG

. : . : . : . : . : . :
JMFF020N18+ ATTCTTTCCACTGACAAATCGCCTA
JMSF040N15+ ATTCTTTCCACTGACAAATCGCCTACAAAGAATGGTGTTAGTGAAAATGGTTATCTATCT
JMFS158G01+ ATTCTTTCCACTGACAAATCGCCTACAAAGAATGGTGTTAGTGAAAATGGTTATCTATCT
JMFF044J23+ ATTCTTTCCACTGACAAATCGCCTACAAAGAATGGTGTTAGTGAAAATGGTTATCTATCT
JMFS097D01+ ATTCTTTCCACTGACAAATCGCCTACAAAGAATGGTGTTAGTGAAAATGGTTATCTATCT
JMFS135G12+ ATTCTTTCCACTGACAAATCGCCTACAAAGAATGGTGTTAGTGAAAATGGTTATCTATCT
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consensus ATTCTTTCCACTGACAAATCGCCTACAAAGAATGGTGTTAGTGAAAATGGTTATCTATCT

. : . : . : . : . : . :
JMSF040N15+ AATCCCTTCAGCCCTGGAGCTGGGCGAAGTCAGATTAAGTTCACATTGCTTTTGCTCAAA
JMFS158G01+ AATCCCTTCAGCCCTGGAGCTGGGCGAAGTCAGATTAAGTTCACATTGCTTTTGCTCAAA
JMFF044J23+ AATCCCTTCAGCCCTGGAGCTGGGCGAAGTCAGATTAAGTTCACATTGCTTTTGCTCAAA
JMFS097D01+ AATCCCTTCAGCCCTGGAGCTGGGCGAAGTCAGATTAAGTTCACATTGCTTTTGCTCAAA
JMFS135G12+ AATCCCTTCAGCCCTGGAGCTGGGCGAAGTCAGATTAAGTTCACATTGCTTTTGCTCAAA
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consensus AATCCCTTCAGCCCTGGAGCTGGGCGAAGTCAGATTAAGTTCACATTGCTTTTGCTCAAA

. : . : . : . : . : . :
JMSF040N15+ CTTAGCTTAGTTGCCATAGTAGTTCTTGCTCTTACTGGATCCTTTTGG
JMFS158G01+ CTT
JMFF044J23+ CTTAGCTTAGTTGCCATAGTAGTTCTTGCTCTTACTGGATCCTTTTGGTGGACAATCTCA
JMFS097D01+ CTTAGCTTAGTTGCCATAGTAGTTCTTGCTCTTACTGGATCCTTTTGGTGGACAATCTCA
JMFS135G12+ CTTAGCTTAGTTGCCATAGTAGTTCTTGCTCTTACTGGATCCTTTTGGTGGACAATCTCA
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consensus CTTAGCTTAGTTGCCATAGTAGTTCTTGCTCTTACTGGATCCTTTTGGTGGACAATCTCA

. : . : . : . : . : . :
JMFF044J23+ ATAACGAGCTCATCCAGGGGTAAAATATATCATGGGTACCGTAGGCTTNCAGAACAAGTA
JMFS097D01+ ATAACGAGCTCATCCAGGGGTAAAATATATCATGGGTACCGTAGGCTTCAAGAACAAGTA
JMFS135G12+ ATAACGAGCTCATCCAGGGGTAAAATATATCATGGGTACCGTAGGCTTCAAGAACAAGTA
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consensus ATAACGAGCTCATCCAGGGGTAAAATATATCATGGGTACCGTAGGCTTCAAGAACAAGTA

. : . : . : . : . : . :
JMFF044J23+ G
JMFS097D01+ GTGTTGGACTTGA
JMFS135G12+ GTGTTGGACTTGAAGGACATTGGACACTTGTCTCTTGGTTCTTCTAAATTGAAGGATCTG
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consensus GTGTTGGACTTGAAGGACATTGGACACTTGTCTCTTGGTTCTTCTAAATTGAAGGATCTG

. : . : . : . : . : . :
JMFS135G12+ GAGTATTGTCCACCCGAGGCTGAGAATTATGTTCCATGCTTTAATGTGTCAGAAAGTCTC
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consensus GAGTATTGTCCACCCGAGGCTGAGAATTATGTTCCATGCTTTAATGTGTCAGAAAGTCTC

. : . : . : . : . : . :
JMFS135G12+ GAGTTAGGCTTT
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consensus GAGTTAGGCTTT