Alignment Contig 5999

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF029J15+ GTGCAGCAATCACCCATCTCTTCCTATCTTCACTACTATTATTCCCTCTTTTGTACATAA
JMFF020O19+ AGCAATCACCCATCTCTTCCTATCTTCACTACTATTATTCCCTCTTTTGTACATAA
JMSF032O23+ AGCAATCACCCATCTCTTCCTATCTTCACTACTATTATTCCCTCTTTTGTACATAA
JMFS065A05+ TATTCCCTCTTTTGTACATAA
JMFF049H23+ AGCAATCACCCATCTCTTCCTATCTTCACTACTATTATTCCCTCTTTTGTACATAA
JMSF039E17+ AGCAATCACCCATCTCTTCCTATCTTCACTACTATTATTCCCTCTTTTGTACATAA
____________________________________________________________
consensus GTGCAGCAATCACCCATCTCTTCCTATCTTCACTACTATTATTCCCTCTTTTGTACATAA

. : . : . : . : . : . :
JMFF029J15+ AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
JMFF020O19+ AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
JMSF032O23+ AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
JMFN005D11+ CTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
JMFS065A05+ AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
JMFF049H23+ AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
JMSF039E17+ AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC
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consensus AAATATTTTTCTTTTTCTTTCATTTCCTCCGTTGAGGGATAGGAGGAAGCAAAATAATGC

. : . : . : . : . : . :
JMFF029J15+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
JMFF020O19+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
JMSF032O23+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
JMFN005D11+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
JMFS065A05+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
JMFF049H23+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
JMSF039E17+ AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG
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consensus AGATGGGTGAGAGTGCCGCTGCCACCAAGAACCACCGCCACCACCTCGGCGTTTCCATTG

. : . : . : . : . : . :
JMFF029J15+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
JMFF020O19+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
JMSF032O23+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
JMFN005D11+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
JMFS065A05+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
JMFF049H23+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
JMSF039E17+ ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG
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consensus ACGCGCCACCGCTCTATGGCTTCAAGGGGCTTGATGATGACGGTCGACCCCAGCGGACTG

. : . : . : . : . : . :
JMFF029J15+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
JMFF020O19+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
JMSF032O23+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
JMFN005D11+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
JMFS065A05+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
JMFF049H23+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
JMSF039E17+ GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT
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consensus GGACGGTTTGGACGGCGAGCGCCCACATAATAACGGCGGTGATTGGATCCGGAGTGCTTT

. : . : . : . : . : . :
JMFF029J15+ CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
JMFF020O19+ CACTANCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
JMSF032O23+ CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
JMFN005D11+ CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
JMFS065A05+ CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
JMFF049H23+ CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
JMSF039E17+ CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT
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consensus CACTAGCTTGGGCTATTGGGCAGTTGGGCTGGGTTGCCGGCCCATCTGTGATGTTATTAT

. : . : . : . : . : . :
JMFF029J15+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
JMFF020O19+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
JMSF032O23+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
JMFN005D11+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
JMFS065A05+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
JMFF049H23+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
JMSF039E17+ TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC
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consensus TCTCGTGTGTGGTTTATTACACTTCTACCCTCCTCGCCGATTGTTACCGTGCCGGAGACC

. : . : . : . : . : . :
JMFF029J15+ CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
JMFF020O19+ CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
JMSF032O23+ CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
JMFN005D11+ CCGTGTTTGGCAAAAGAAAGTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
JMFS065A05+ CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
JMFF049H23+ CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
JMSF039E17+ CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT
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consensus CCGTGTTTGGCAAAAGAAATTACACTTACATGGATGCCGTTAGATCTAATCTTGGAGGAT

. : . : . : . : . : . :
JMFF029J15+ ATCA
JMFF020O19+ ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT
JMSF032O23+ ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT
JMFN005D11+ ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT
JMFS065A05+ ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT
JMFF049H23+ ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT
JMSF039E17+ ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT
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consensus ATCAAGTCAAAATATGTGGGCTGATTCAATATTTCAACCTTTTTGGAATCGCCATTGGTT

. : . : . : . : . : . :
JMSF032O23+ ACACCATTGCAGCATCAATAAGCATGATGGCGATCAAAAGATCGAATTGTTTCCATGAGA
JMFN005D11+ ACACCATTGCAGCATCAATAAGCATGATGGCGATCAAAAGATCGAATTGTTTCCATGAGA
JMFS065A05+ ACACCATTGCAGCATCAATAAGCATGATGGCGATCAAAAGATCGAATTGTTTCCATGAGA
JMFF049H23+ ACACCATTGCAGCATCAATAAGCATGATGGCGATNCAAAGATCGAATTGTTTCCATGAGA
JMSF039E17+ ACACCATTGCAGCATCAATAAGCATGATGGCGATCAAAAGATCGAATTGTTTCCATGAGA
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consensus ACACCATTGCAGCATCAATAAGCATGATGGCGATCAAAAGATCGAATTGTTTCCATGAGA

. : . : . : . : . : . :
JMSF032O23+ GTGGAGGAAAGAACCCGTGCCATATGTCGAGCAATCCATACATGATTGCTTTTGGAATTA
JMFN005D11+ GTGGAGGAAAGAACCCGTGCCATATGTCGAGCAATCCATACATGATTGCTTTTGGAATTA
JMFS065A05+ GTGGAGGAAAGAACCCGTGCCATATGTCGAGCAATCCATACATGATTGCTTTTGGAATTA
JMFF049H23+ GTGGAGGANAGAACCCGTGCCATATGTCGAGCAATCCATACATGATT
JMSF039E17+ GTGGAGGAAAGAACCCGTGCCATATGTCGAGCAATCCATACATGATTGCTTTTGGA
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consensus GTGGAGGAAAGAACCCGTGCCATATGTCGAGCAATCCATACATGATTGCTTTTGGAATTA

. : . : . : . : . : . :
JMSF032O23+ TAGAAATTATTCTATCTCAAATCCCGGANTTTGAT
JMFN005D11+ TAGAAATTATTCTATCTCAAATCCCGG
JMFS065A05+ TAGAAA
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consensus TAGAAATTATTCTATCTCAAATCCCGGANTTTGAT