Alignment Contig 5989

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF027I17+ GGTCATCGGCTGCCAGTTTCTGGAGCTAATCATACTCCGCAAATCCAGGTGGAGTGGCTT
JMFF023A01+ GGTCATCGGCTGCCAGTTTCTGGAGCTAATCATACTCCGCAAATCCAGGTGGAGTGGCTT
JMFF020E04+ GGTCATCGGCTGCCAGTTTCTGGAGCTAATCATACTCCGCAAATCCAGGTGGAGTGGCTT
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consensus GGTCATCGGCTGCCAGTTTCTGGAGCTAATCATACTCCGCAAATCCAGGTGGAGTGGCTT

. : . : . : . : . : . :
JMFF027I17+ ATAAATCTTTCCCACGTGTTCCCTGAAGCTGGAAAAGCGCAATGCCGATGTGCAACTCGT
JMFF023A01+ ATAAATCTTTCCCACGTGTTCCCTGAAGCTGGAAAAGCGCAATGCCGATGTGCAACTCGT
JMFF016D18+ ATAAATCTTTCCCACGTGTTCCCTGAAGCTGGAAAAGCGCAATGCCGATGTGCAACTCGT
JMFF020E04+ ATAAATCTTTCCCACGTGTTCCCTGAAGCTGGAAAAGCGCAATGCCGATGTGCAACTCGT
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consensus ATAAATCTTTCCCACGTGTTCCCTGAAGCTGGAAAAGCGCAATGCCGATGTGCAACTCGT

. : . : . : . : . : . :
JMFF027I17+ CGCCGCCGTCGTCCACGTCGTCGAGCTCAACGAAATCGTGGCTCGTTCACGCTCTGGTGG
JMFF023A01+ CGCCGCCGTCGTCCACGTCGTCGAGCTCAACGAAATCGTGGCTCGTTCACGCTCTGGTGG
JMFF016D18+ CGCCGCCGTCGTCCACGTCGTCGAGCTCAACGAAATCGNGGCTCGTTCACGCTCTGGTGG
JMFF020E04+ CGCCGCCGTCGTCCACGTCGTCGAGCTCAACGAAATCGTGGCTCGTTCACGCTCTGGTGG
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consensus CGCCGCCGTCGTCCACGTCGTCGAGCTCAACGAAATCGTGGCTCGTTCACGCTCTGGTGG

. : . : . : . : . : . :
JMFF027I17+ CCGGAGCCGCAGTGGCCGTTGCTTTCGGTGCTCACAGATACTTTCTTAGATCTGGGAAGT
JMFF023A01+ CCGGAGCCGCAGTGGCCGTTGCTTTCGGTGCTCACAGATACTTTCTTAGATCTGGGAAGT
JMFF016D18+ CCGGAGCCGCAGTGGCCGTTGCTTTCGGTGCTCACAGATACTTTCTTANATCTGGGAAGT
JMFF020E04+ CCGGAGCCGCAGTGGCCGTTGCTTTCGGTGCTCACAGATACTTTCTTAGATCTGGGAAGT
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consensus CCGGAGCCGCAGTGGCCGTTGCTTTCGGTGCTCACAGATACTTTCTTAGATCTGGGAAGT

. : . : . : . : . : . :
JMFF027I17+ TCCGGAGTCGGGTCATCGGGATCATACCCGCCCGTTTCGCTTCCACTCGGTTCCCTGGTA
JMFF023A01+ TCCGGAGTCGGGTCATCGGGATCATACCCGCCCGTTTCCCTTCCACTCGGTTCCCTGGTA
JMFF016D18+ TCCGGAGTCGGGTCATCGGGATCATACCCGCCCGTTTCGCTTCCACTCGGTTCCCTGGTA
JMFF020E04+ TCCGGAGTCGGGTCATCGGGATCATACCCGCCCGTTTCGCTTCCACTCGGTTCCCTGGTA
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consensus TCCGGAGTCGGGTCATCGGGATCATACCCGCCCGTTTCGCTTCCACTCGGTTCCCTGGTA

. : . : . : . : . : . :
JMFF027I17+ AACCGCTCGTAGATATCCTCGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCGAAAT
JMFF023A01+ AACCGCTCGTAGATATCCTCGGCAAGCCCATGATCCA
JMFF016D18+ AACCGCTCGTANATATCCTCGGCNAGCCCNTGATCCANAGAACATGGGAAAGGGCGAAAT
JMFF020E04+ AACCGCTCGTAGATATCCTCGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCGAAAT
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consensus AACCGCTCGTAGATATCCTCGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCGAAAT

. : . : . : . : . : . :
JMFF027I17+ TAGCTAGGGCATTGGATCAAGTTGTTGTGGCGACGGATGATGAAAAGATTGCTGAATGTT
JMFF016D18+ TAGCTAGGGCATTGGATCAAGTTGTTGTGGCGACGGATGATGAAAAGATTGCTGAATGT
JMFF020E04+ TANCTAGGGCATTGGATCAAGTTGTTGTGGCGACGGATGATGAAAAGA
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consensus TAGCTAGGGCATTGGATCAAGTTGTTGTGGCGACGGATGATGAAAAGATTGCTGAATGTT

. : . : . : . : . : . :
JMFF027I17+ GTAGGGGATTTGGTGCTGAAGTCATTATGACTTCTGAATCATGTAGAAATGGAACTGAGC
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consensus GTAGGGGATTTGGTGCTGAAGTCATTATGACTTCTGAATCATGTAGAAATGGAACTGAGC

. : . : . : . : . : . :
JMFF027I17+ GATGTAATGAGGCTCTTCAAAAGCTCGAGAAGAAGTATGACATTGTTGTT
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consensus GATGTAATGAGGCTCTTCAAAAGCTCGAGAAGAAGTATGACATTGTTGTT