Alignment Contig 5946

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF017H13+ ATCGTCAGCGGGTTAACTGTCGGTGCTGTGTTGCATCAGCAAAGCCCATTTTTACAGACT
JMFF036F14+ GGGTTAACTGTCGGTGCTGTGTTGCATCAGCAAAGCCCATTTTTACAGACT
JMFF049P02+ GGGTTAACTGTCGGTGCTGTGTTGCATCAGCAAAGCCCATTTTTACAGACT
JMSF041E18+ GGGTTAACTGTCGGTGCTGTGTTGCATCAGCAAAGCCCATTTTTACAGACT
JMSF041G05+ AACTGTCGGTGCTGTGTTGCATCAGCAAAGCCCATTTTTACAGACT
____________________________________________________________
consensus ATCGTCAGCGGGTTAACTGTCGGTGCTGTGTTGCATCAGCAAAGCCCATTTTTACAGACT

. : . : . : . : . : . :
JMFF017H13+ CACCAACTGTTTTTCTCTGCCCCTATCAACCATACATCTCTCCACTCCTCTCACCGACAT
JMFF036F14+ CACCAACTGTTTTTCTCTGCCCCTATCAACCATACATCTCTCCACTCCTCTCACCGACAT
JMFF049P02+ CACCAACTGTTTTTCTCTGCCCCTATCAACCATACATCTCTCCACTCCTCTCACCGACAT
JMSF041E18+ CACCAACTGTTTTTCTCTGCCCCTATCAACCATACATCTCTCCACTCCTCTCACCGACAT
JMSF041G05+ CACCAACTGTTTTTCTCTGCCCCTATCAACCATACATCTCTCCACTCCTCTCACCGACAT
____________________________________________________________
consensus CACCAACTGTTTTTCTCTGCCCCTATCAACCATACATCTCTCCACTCCTCTCACCGACAT

. : . : . : . : . : . :
JMFF017H13+ TTCCATTCTCAACATTCAAGCTCAAAAGAAGAAGAAAAGAAGAAAGATTTGATTTTTGTG
JMFF036F14+ TTCCATTCTCAACATTCAAGCTCAAAAGAAGAAGAAAAGAAGAAAGATTTGATTTTTGTG
JMFF049P02+ TTCCATTCTCAACATTCAAGCTCAAAAGAAGAAGAAAAGAAGAAAGATTTGATTTTTGTG
JMSF041E18+ TTCCATTCTCAACATTCAAGCTCAAAAGAAGAAGAAAAGAAGAAAGATTTGATTTTTGTG
JMSF041G05+ TTCCATTCTCAACATTCAAGCTCAAAAGAAGAAGAAAAGAAGAAAGATTTGATTTTTGTG
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consensus TTCCATTCTCAACATTCAAGCTCAAAAGAAGAAGAAAAGAAGAAAGATTTGATTTTTGTG

. : . : . : . : . : . :
JMFF017H13+ GGAAGAACTCAAAGAAGTTCCTGTATAAAAGGTGGGGAGAAAATGGGGGATAAGTCGAGG
JMFF036F14+ GGAAGAACTCAAAGAAGTTCCTGTATAAAAGGTGGGGAGAAAATGGGGGATAAGTCGAGG
JMFF049P02+ GGAAGAACTCAAAGAAGTTCCTGTATAAAAGGTGGGGAGAAAATGGGGGATAAGTCGAGG
JMSF041E18+ GGAAGAACTCAAAGAAGTTCCTGTATAAAAGGTGGGGAGAAAATGGGGGATAAGTCGAGG
JMSF041G05+ GGAAGAACTCAAAGAAGTTCCTGTATAAAAGGTGGGGAGAAAATGGGGGATAAGTCGAGG
____________________________________________________________
consensus GGAAGAACTCAAAGAAGTTCCTGTATAAAAGGTGGGGAGAAAATGGGGGATAAGTCGAGG

. : . : . : . : . : . :
JMFF017H13+ TCGAAAGGGGGTTGGTGCGGGTGGCTGCTGGTGGTGATAGTTGCGGCGGCGATTGGGGTT
JMFF036F14+ TCGAAAGGGGGTTGGTGCGGGTGGCTGCTGGTGGTGATAGTTGCGGCGGCGATTGGGGTT
JMFF049P02+ TCGAAAGGGGGTTGGTGCGGGTGGCTGCTGGTGGTGATAGTTGCGGCGGCGATTGGGGTT
JMSF041E18+ TCGAAAGGGGGTTGGTGCGGGTGGCTGCTGGTGGTGATAGTTGCGGCGGCGATTGGGGTT
JMSF041G05+ TCGAAAGGGGGTTGGTGCGGGTGGCTGCTGGTGGTGATAGTTGCGGCGGCGATTGGGGTT
____________________________________________________________
consensus TCGAAAGGGGGTTGGTGCGGGTGGCTGCTGGTGGTGATAGTTGCGGCGGCGATTGGGGTT

. : . : . : . : . : . :
JMFF017H13+ TCCATTTT-CGTGCTTGTGAAGAAGAAACACGGCGGCGGCGGCTCGTCGGAGCCGGATGC
JMFF036F14+ TCCATTTT-CGTGCTTGTGAAGAAGAAACACGGCGGCGGCGGCTCGTCGGAGCCGGATGC
JMFF049P02+ TCCATTTT-CGTGCTTGTGAAGAAGAAACACGGCGGCGGCGGCTCGTCGGAGCCGGATGC
JMSF041E18+ TCCATTTTTCGTGCTTGTGAAGAAGAAACACGGCGGCGGCGGCTCGTCGGAGCCGGATGC
JMSF041G05+ TCCATTTT-CGTGCTTGTGAAGAAGAAACACGGCGGCGGCGGCTCGTCGGAGCCGGATGC
____________________________________________________________
consensus TCCATTTT-CGTGCTTGTGAAGAAGAAACACGGCGGCGGCGGCTCGTCGGAGCCGGATGC

. : . : . : . : . : . :
JMFF017H13+ CGCCCCTGTTCCCGGGCCTCCCGGCGCCGTTACTCAGAAATACGGCGACGCCCTCAAGAT
JMFF036F14+ CGCCCCTGTTCCCGGGCCTCCCGGCGCCGTTACTCAGAAATACGGCGACGCCCTCAAGAT
JMFF049P02+ CGCCCCTGTTCCCGGGCCTCCCGGCGCCGTTACTCAGAAATACGGCGACGCCCTCAAGAT
JMSF041E18+ CGCCCCTGTTCCCGGGCCTCCCGGCGCCGTTACTCAGAAATACGGCGACGCCCTCAAGAT
JMSF041G05+ CGCCCCTGTTCCCGGGCCTCCCGGCGCCGTTACTCAGAAATACGGCGACGCCCTCAAGAT
____________________________________________________________
consensus CGCCCCTGTTCCCGGGCCTCCCGGCGCCGTTACTCAGAAATACGGCGACGCCCTCAAGAT

. : . : . : . : . : . :
JMFF017H13+ CGCAATGCAGTTCTTCGATGTTCAGAAGTCTGGGAAGTTGGTAGACAACAAAATATCGTG
JMFF036F14+ CGCAATGCAGTTCTTCGATGTTCAGAAGTCTGGGAAGTTGGTAGACAACAAAATATCGTG
JMFF049P02+ CGCAATGCAGTTCTTCGATGTTCAGAAGTCTGGGAAGTTGGTAGACAACAAAATATCGTG
JMSF041E18+ CGCAATGCAGTTCTTCGATGTTCAGAAGTCTGGGAAGTTGGTAGACAACAAAATATCGTG
JMSF041G05+ CGCAATGCAGTTCTTCGATGTTCAGAAGTCTGGGAAGTTGGTAGACAACAAAATATCGTG
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consensus CGCAATGCAGTTCTTCGATGTTCAGAAGTCTGGGAAGTTGGTAGACAACAAAATATCGTG

. : . : . : . : . : . :
JMFF017H13+ GCGAGGGGATTCCGGTCTCAAAGATGGCAAATCAGCGAGTCTAGATCTGAGTAAAGGAAT
JMFF036F14+ GCGAGGGGATTCCGGTCTCAAAGATGGCAAATCAGCGAGTCTAGATCTGAGTAAAGGAAT
JMFF049P02+ GCGAGGGGATTCCGGTCTCAAAGATGGCAAATCAGCGAGTCTAGATCTGAGTAAAGGAAT
JMSF041E18+ GCGAGGGGATTCCGGTCTCAAAGATGGCAAATCAGCGAGTCTAGATCTGAGTAAAGGAAT
JMSF041G05+ GCGAGGGGATTCCGGTCTCAAAGATGGCAAATCAGCGAGTCTAGATCTGAGTAAAGGAAT
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consensus GCGAGGGGATTCCGGTCTCAAAGATGGCAAATCAGCGAGTCTAGATCTGAGTAAAGGAAT

. : . : . : . : . : . :
JMFF017H13+ GTATGATGCTGGGGACCTTATGAAA
JMFF036F14+ GTATGATGCTGGGGACCT
JMFF049P02+ GTATGATGCTGGGGACCTTATGAAATTCGGGTTCCCGATGGCGTATACTGCG
JMSF041E18+ GTATGATGCTGGGGACCTTATGAAATTCGGGTTCCCGATGGCGTATACTGCGACAGTATT
JMSF041G05+ GTATGATGCTGGGGACCTTATGAAATTCGGGTTCCCGATGGCGTATACTGCGACAGTATT
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consensus GTATGATGCTGGGGACCTTATGAAATTCGGGTTCCCGATGGCGTATACTGCGACAGTATT

. : . : . : . : . : . :
JMSF041E18+ GGCGTGGACGATCCTCGAGTATGGTGATCAGATGGCGGTAGTGAAACAGTTAGAACCCGC
JMSF041G05+ GGCGTGGACGATCCTCGAGTATGGTGATCAGATGGCGGTAGTGAAACAGTTAGAACCCGC
____________________________________________________________
consensus GGCGTGGACGATCCTCGAGTATGGTGATCAGATGGCGGTAGTGAAACAGTTAGAACCCGC

. : . : . : . : . : . :
JMSF041E18+ CAAAGGTTCGCTCAAATGGATCACTGACTACCTTGTCAACGCGCATCCTGATGACAACGT
JMSF041G05+ CAAAGGTTCGCTCAAATGGATCACTGACTACCTTGTCAACGCGCATCCTGATGACAACGT
____________________________________________________________
consensus CAAAGGTTCGCTCAAATGGATCACTGACTACCTTGTCAACGCGCATCCTGATGACAACGT

. : . : . : . : . : . :
JMSF041E18+ CCTTTACATTCAGGTGGGTGATCCCGACCTAGACCATAAAATGCTGGCAAAGGCCTGAAG
JMSF041G05+ CCTTTACATTCAGGTGGGTGATCCCGACCTAGACCATAAA-TGCTGGCAAAGGCCTGAAG
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consensus CCTTTACATTCAGGTGGGTGATCCCGACCTAGACCATAAAATGCTGGCAAAGGCCTGAAG

. : . : . : . : . : . :
JMSF041E18+ ACATGACTGAATCGAGGCCTCTTACCCAAATTAACGCTTCTGTCC
JMSF041G05+ ACATGACTGAATCGAGGCCTCTTACCCNAATTAACGCTTCTGTCCCGGG
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consensus ACATGACTGAATCGAGGCCTCTTACCCAAATTAACGCTTCTGTCCCGGG